BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0491.p (244 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310025|ref|YP_003774117.1| biopolymer transport transmembr... 350 8e-98 gi|300312127|ref|YP_003776219.1| biopolymer transport transmembr... 206 1e-54 gi|300309940|ref|YP_003774032.1| biopolymer transport transmembr... 196 1e-51 gi|300310552|ref|YP_003774644.1| MotA/TolQ/ExbB proton channel f... 77 1e-15 >gi|300310025|ref|YP_003774117.1| biopolymer transport transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 350 bits (897), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 170/223 (76%), Positives = 193/223 (86%) Query: 1 MDASPYGLTALWSQGDVVTKAVALLLTMMSMASWYVIVTKALQLWRYRTPAHAAGHAFWE 60 M+ SPYGL +LW+QGD VTK VA+LL MS+ASWYVI+TKALQL R R + AAGH FW+ Sbjct: 1 MEVSPYGLESLWAQGDFVTKGVAVLLLAMSIASWYVIITKALQLLRLRKASAAAGHQFWD 60 Query: 61 AANVAAGITLLGRDNPFAALASAGQGAVDHHTTHQGQLQDRLPVSEWVTLSLRQAIDEAS 120 N+ G+ LG+DNPFA +A AG A+ HHT H+G L D+L VS+WVTLSLRQAIDEAS Sbjct: 61 TTNLPEGVATLGQDNPFAEVAKAGVTAMSHHTAHKGHLHDQLSVSDWVTLSLRQAIDEAS 120 Query: 121 ASLQSGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGSSGQASIDKVAGPVGEALIMTAL 180 LQ+GMAVLASVGSTAPFVGLFGTVWGIYHALVSIG++GQASIDKVAGPVGEALIMTAL Sbjct: 121 GKLQAGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGTTGQASIDKVAGPVGEALIMTAL 180 Query: 181 GLAVAIPATFGYNALLRGNKSILARLNKLGFELHALFVTGARA 223 GLAVAIPATFGYNAL+RGNK+ILA+LNK GF+LHALFVTGARA Sbjct: 181 GLAVAIPATFGYNALVRGNKTILAKLNKFGFDLHALFVTGARA 223 >gi|300312127|ref|YP_003776219.1| biopolymer transport transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 206 bits (524), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 108/228 (47%), Positives = 146/228 (64%), Gaps = 4/228 (1%) Query: 6 YGLTALWSQGDVVTKAVALLLTMMSMASWYVIVTKALQLWRYRTPAHAAGHAFWEAANVA 65 YGL +W QGDVVT+ + +L MS SW V++ K + R A FW A ++ Sbjct: 4 YGLANVWLQGDVVTRFLITILLGMSSVSWIVMIVKGMANRRLSRIGLKAHKEFWAAHSIE 63 Query: 66 AGITLLG--RDNPFAALASAGQGAVDHHTTHQGQLQDRLPVSEWVTLSLRQAIDEASASL 123 GI +G DNP++ +A+A A Q L+ +EWV +R +DE A L Sbjct: 64 GGIAAIGAGTDNPYSNIATAAVEA--QAQKDQPLLEGSTSNTEWVAYCVRNELDEQIAHL 121 Query: 124 QSGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGSSGQASIDKVAGPVGEALIMTALGLA 183 Q G+AVLAS+GST+PF+GLFGTVWGIYHAL++IG+SGQAS+D VAGPVGE+L+MTA+GL Sbjct: 122 QGGLAVLASIGSTSPFIGLFGTVWGIYHALIAIGASGQASLDHVAGPVGESLVMTAVGLF 181 Query: 184 VAIPATFGYNALLRGNKSILARLNKLGFELHALFVTGARADSASAASE 231 VAIPA GYN + RGN+++ +L + +LH +VTG + A AA E Sbjct: 182 VAIPAVLGYNYVARGNRTVAQKLMRFSHQLHVYYVTGNKMREAQAAKE 229 >gi|300309940|ref|YP_003774032.1| biopolymer transport transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 231 Score = 196 bits (499), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 110/221 (49%), Positives = 139/221 (62%), Gaps = 6/221 (2%) Query: 7 GLTALWSQGDVVTKAVALLLTMMSMASWYVIVTKALQLWRYRTPAHAAGHAFWEA---AN 63 G W+QGD V+ +VA LL +MS+ASWY I++KA WR R ++A FW+A A+ Sbjct: 6 GFAHYWAQGDAVSHSVAYLLLIMSIASWYYILSKAWAAWRIRRGSNAL-ERFWQAPTLAD 64 Query: 64 VAAGITLLGRDNPFAALASAGQGAVDHHTTHQG--QLQDRLPVSEWVTLSLRQAIDEASA 121 A + L + + +A A D T QG L E +T +LR+ I+ SA Sbjct: 65 ATAAMQRLDSEQIYTPMAERAAEAADIGTRQQGTPSLNAATDPGELITRTLRREINRVSA 124 Query: 122 SLQSGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGSSGQASIDKVAGPVGEALIMTALG 181 L+ G+ +LASVGSTAPFVGLFGTVWGIYHALV++ +SG IDKVAGPVGEALIMTALG Sbjct: 125 RLERGLTLLASVGSTAPFVGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIMTALG 184 Query: 182 LAVAIPATFGYNALLRGNKSILARLNKLGFELHALFVTGAR 222 L VAIPA YNA R N+ +LA L+ +LHA TG R Sbjct: 185 LLVAIPAVLAYNAFTRINRVVLAELDGFAHDLHAYLTTGER 225 >gi|300310552|ref|YP_003774644.1| MotA/TolQ/ExbB proton channel family protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 77.4 bits (189), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 41/83 (49%), Positives = 55/83 (66%) Query: 111 SLRQAIDEASASLQSGMAVLASVGSTAPFVGLFGTVWGIYHALVSIGSSGQASIDKVAGP 170 ++R A +L+S +A LASVGS +P+VGLFGTVWGI +A + + QA++ VA Sbjct: 123 AMRAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAAVAPG 182 Query: 171 VGEALIMTALGLAVAIPATFGYN 193 + EALI TA+GL AIPA YN Sbjct: 183 IAEALIATAIGLFAAIPAVVAYN 205 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.130 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 747,915 Number of extensions: 29567 Number of successful extensions: 141 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 140 Number of HSP's successfully gapped: 4 Length of query: 244 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 161 Effective length of database: 1,226,865 Effective search space: 197525265 Effective search space used: 197525265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)