BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0486.p (377 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [He... 689 0.0 gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum serop... 286 1e-78 gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspir... 72 5e-14 gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desucc... 72 6e-14 >gi|300312510|ref|YP_003776602.1| acetylornithine deacetylase [Herbaspirillum seropedicae SmR1] Length = 400 Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/398 (83%), Positives = 353/398 (88%), Gaps = 23/398 (5%) Query: 1 MNAPLTSAAAQPTEATLDILKTLIGFNTISRESNLGLIEWIRDLLERHGATTRLTYDAER 60 MNA LT+AA+QPT TLDIL TLIGFNT+SRESNLGLIEW+RD LERHGA TRLTYDAER Sbjct: 1 MNASLTTAASQPTRQTLDILTTLIGFNTVSRESNLGLIEWVRDHLERHGAVTRLTYDAER 60 Query: 61 RKANLFATLGDAGPGRFGTVFSGHTDVVPVKGQNWDTDPFVAHVADGKLFGRGACDMKGF 120 RKANLFATLGDAGPGRFGTVFSGHTDVVPV GQ WDTDPFVAHVADGKLFGRGACDMKGF Sbjct: 61 RKANLFATLGDAGPGRFGTVFSGHTDVVPVTGQKWDTDPFVAHVADGKLFGRGACDMKGF 120 Query: 121 IAVCLARLPAIAQDRLYTPLHFSFSYDEEVGCLGVRELLADLQQNDIKPTGVIIGEPTMM 180 IA+C+ARLPAI RL+TPLHFSFSYDEEVGCLGVRELLADLQQNDI+PTGVIIGEPTMM Sbjct: 121 IAICMARLPAIDLARLHTPLHFSFSYDEEVGCLGVRELLADLQQNDIRPTGVIIGEPTMM 180 Query: 181 QPVIAHKGKRSYRCSVHGHAAHSSCPHLGINSIDYAAMMQLKIREIALRVRHSEAQDYDF 240 QPVIAHKGKRSYRCSVHGHAAHSSCPHLGINSID+AAMMQLKIREIALRVRHS QD DF Sbjct: 181 QPVIAHKGKRSYRCSVHGHAAHSSCPHLGINSIDFAAMMQLKIREIALRVRHSGVQDDDF 240 Query: 241 DVPYSSIVTTLSNGGNAPNIIPDKAEFVFEHRFLPGIDPAGVFDEVKRYAEQEVLPQMQI 300 DVPYSSI TTL++GGNAPNIIPDKAEFVFEHRFLPGIDPA VF+EVK YAEQE+LPQM+I Sbjct: 241 DVPYSSIATTLTSGGNAPNIIPDKAEFVFEHRFLPGIDPAEVFEEVKAYAEQEILPQMRI 300 Query: 301 EGAQGRIEFETLTAYPGMSTSPDDPLVSSALRILGSERARKVGFGT-------------- 346 +G QGRIEFETLT+YPGM T DDPLV+SALRILGSERARKVGFGT Sbjct: 301 DGVQGRIEFETLTSYPGMCTPADDPLVTSALRILGSERARKVGFGTEGGLFGQAGMPAVI 360 Query: 347 ---------HKPNEFVTLEQLARCESFFDNFVASAHLK 375 HKPNEFVTLEQLARCE FFDNF+ASAHL+ Sbjct: 361 CGPGDIAHAHKPNEFVTLEQLARCERFFDNFIASAHLQ 398 >gi|300312087|ref|YP_003776179.1| peptidase [Herbaspirillum seropedicae SmR1] Length = 395 Score = 286 bits (733), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 152/378 (40%), Positives = 209/378 (55%), Gaps = 28/378 (7%) Query: 16 TLDILKTLIGFNTISRESNLGLIEWIRDLLERHGATTRLTYDAERRKANLFATL-GDAGP 74 T L+TL+ F+T SR SNL LI +RD L++ G + L ++ ++ KANLFATL AGP Sbjct: 8 TRQWLETLVAFDTTSRNSNLELITTVRDSLQQQGVASWLAHNKDKTKANLFATLPATAGP 67 Query: 75 ----GRFGTVFSGHTDVVPVKGQNWDTDPFVAHVADGKLFGRGACDMKGFIAVCLARLPA 130 G V SGHTDVVPV GQ WDTDPF DG L+ RG+CDMKGFIA LA +P Sbjct: 68 HAGSTEGGIVLSGHTDVVPVDGQKWDTDPFKLTEKDGALYARGSCDMKGFIATALALVPE 127 Query: 131 IAQDRLYTPLHFSFSYDEEVGCLGVRELLADLQQNDIKPTGVIIGEPTMMQPVIAHKGKR 190 P+H +FS+DEE+GC+G +L ++ + IK G ++GEPT M V+AHKG Sbjct: 128 YLAMPRVKPIHLAFSFDEEIGCIGAPVMLEEIVKRGIKVDGCVVGEPTSMNVVVAHKGIN 187 Query: 191 SYRCSVHGHAAHSSCPHLGINSIDYAAMMQLKIREIALRVRHSEAQDYDFDVPYSSIVTT 250 + C VHG +AHSS G N+I++AA + IR+ A + + D FDVP+S++ T Sbjct: 188 VFACKVHGKSAHSSLTPQGCNAIEHAARLICAIRDFADGYKANGPYDQFFDVPFSTMTTN 247 Query: 251 LSNGGNAPNIIPDKAEFVFEHRFLPGIDPAGVFDEVKRYAEQEVLPQMQIEGAQGRIEFE 310 GG A N IP+ EF +E R LPG+ A + ++ +Y + +LP+M+ E R+E + Sbjct: 248 QIRGGIAVNTIPELCEFTYEFRNLPGMSVADIQAQIDKYIAEVLLPKMRTEFPDARVEID 307 Query: 311 TLTAYPGMSTSPDDPLVSSALRILGSERARKVGFGT-----------------------H 347 P + + + G + RKV +GT H Sbjct: 308 NFAGSPALEAVEQAAITELVRALTGDRQTRKVAYGTEAGLFQQIGIPTIVCGPGDIGNAH 367 Query: 348 KPNEFVTLEQLARCESFF 365 KPNEFVTL Q+ CE F Sbjct: 368 KPNEFVTLAQMEHCEQFL 385 >gi|300314019|ref|YP_003778111.1| amino acid deacylase [Herbaspirillum seropedicae SmR1] Length = 414 Score = 72.4 bits (176), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 102/236 (43%), Gaps = 13/236 (5%) Query: 70 GDAGPGRFGTVFSGHTDVVPVKGQNWDTDPFVAHVADGKLFGRGACDMKGFIAVCL--AR 127 GD GP + H DVVP G+ W DP+ +ADG+++GR A K A L R Sbjct: 86 GDGGPT---LALNAHGDVVP-PGEGWTHDPYGGEIADGRIYGRAAAVSKSDFASYLFATR 141 Query: 128 LPAIAQDRLYTPLHFSFSYDEEVGCLGVRELLADLQQNDIKPTGVIIGEPTMMQPVIAHK 187 L + F+YDEE G + L+Q +P ++ V AH Sbjct: 142 ALEAVGASLRGGVELHFTYDEEFGG--LLGPGWLLEQKLTRPD-YVLAAGFSYNVVTAHN 198 Query: 188 GKRSYRCSVHGHAAHSSCPHLGINSIDYAAMMQLKIREIALRVRHSEAQDYDFDVPYSSI 247 + +VHG A H S P G +++ A + I ++ E + + + ++ Sbjct: 199 ACLQFEITVHGRATHGSMPETGHDALQAATAILNAIYGALPGLK--EIRSAIPGITHPTM 256 Query: 248 VTTLSNGGNAPNIIPDKAEFVFEHRFLPGIDPAGVFDEVKRYAEQEV--LPQMQIE 301 + +GG N++P K + R +P DP+ V V++ E V LP +++E Sbjct: 257 IVGRIDGGTNTNVVPGKVVLKMDRRMIPEEDPSQVEAGVRKLIEDAVAGLPGIRVE 312 >gi|300311475|ref|YP_003775567.1| succinyl-diaminopimelate desuccinylase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 76/270 (28%), Positives = 116/270 (42%), Gaps = 27/270 (10%) Query: 16 TLDILKTLIGFNTISRESNLGLIEWIRDLLERHGATTRLTYDAERRKANLFATLGDAGPG 75 TL + + L+ ++++ E G + +LL G E NL+A G A P Sbjct: 6 TLALTQELMSLSSVTPEDK-GCQARLAELLTPLGFVCETIQSGE--VTNLWARKGTAQPL 62 Query: 76 RFGTVFSGHTDVVPVKG-QNWDTDPFVAHVADGKLFGRGACDMKGFIAVCLARLPAIAQD 134 VF+GHTDVVP + W + PF + +G+L+GRGA DMK IA A + A + Sbjct: 63 ---VVFAGHTDVVPTGPLEKWQSHPFQPTLREGRLYGRGASDMKTSIA---AMVVACEEF 116 Query: 135 RLYTPLH-----FSFSYDEEVGCL-GVRELLADLQQNDIKPTGVIIGEPTMMQPV----- 183 P H F + DEE + G + L+ + I+GEPT + + Sbjct: 117 TAAHPDHKGSIGFLITSDEEGPAIDGTVVVCNALKARGEQLDYCIVGEPTSAKTLGDMIK 176 Query: 184 IAHKGKRSYRCSVHGHAAHSSCPHLGINSIDYAAMMQLKIREIALRVRHSEAQDYDFDVP 243 +G S + +V G H + P L N I AA +A V ++ +P Sbjct: 177 NGRRGTMSGKLTVKGIQGHIAYPQLARNPIHQAA------PALAELVAEQWDAGNEYYLP 230 Query: 244 YSSIVTTLSNGGNAPNIIPDKAEFVFEHRF 273 S ++ + G A N+IP + F RF Sbjct: 231 TSWQISNIHGGTGASNVIPGEVMIDFNFRF 260 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,263,900 Number of extensions: 55600 Number of successful extensions: 134 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 129 Number of HSP's successfully gapped: 4 Length of query: 377 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 290 Effective length of database: 1,207,925 Effective search space: 350298250 Effective search space used: 350298250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)