BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0485.p (163 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312512|ref|YP_003776604.1| sensory transduction regulatory... 214 3e-57 gi|300312037|ref|YP_003776129.1| sensory transduction regulatory... 93 1e-20 gi|300313267|ref|YP_003777359.1| response regulator transcriptio... 92 2e-20 gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790... 60 8e-11 gi|300311884|ref|YP_003775976.1| two component response regulato... 57 9e-10 >gi|300312512|ref|YP_003776604.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 214 bits (545), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 100/131 (76%), Positives = 114/131 (87%) Query: 1 MKPPIILMIESNGEAVELVRFALWRNNFHCVLQWVDEADAAIEGLLQRRADGEMQLPGMI 60 M+PPIILMIESNGEAVEL RFALWR+NFHCVLQW DEADAAI+GLL R + +LP +I Sbjct: 1 MRPPIILMIESNGEAVELARFALWRSNFHCVLQWYDEADAAIDGLLHRHRLDDARLPDLI 60 Query: 61 FLDPGMMENNGLDFIQAMKAGRDTRAVPIVVFPDSDYPPEMPALLEAGAVEYLLKPETAQ 120 LDPGMMENNG+DFI AMKAGRDTR++P+VVFPDSDYPPEMP LLEAGA YLLKPETA Sbjct: 61 LLDPGMMENNGVDFILAMKAGRDTRSIPVVVFPDSDYPPEMPDLLEAGASAYLLKPETAP 120 Query: 121 QFMEVVVDRAR 131 Q+M+ VV+ A+ Sbjct: 121 QYMQAVVECAQ 131 >gi|300312037|ref|YP_003776129.1| sensory transduction regulatory protein [Herbaspirillum seropedicae SmR1] Length = 140 Score = 92.8 bits (229), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 51/134 (38%), Positives = 75/134 (55%), Gaps = 1/134 (0%) Query: 1 MKPPIILMIESNGEAVELVRFALWRNNFHCVLQWVDEADAAIEGLLQRRADGE-MQLPGM 59 M P ILM++ + E+VEL RF LWRN C W ++A+ A + L +A LP + Sbjct: 1 MSRPSILMVDPSPESVELARFGLWRNKLDCAFGWFEDAEGAAQSLFNPQARAHPADLPCL 60 Query: 60 IFLDPGMMENNGLDFIQAMKAGRDTRAVPIVVFPDSDYPPEMPALLEAGAVEYLLKPETA 119 I L+P + GL+ + ++A TRA+P+V+F S + AGA +YL+KP A Sbjct: 61 ILLEPRLPRMEGLELLHMLRAHAHTRALPVVMFATSQDDADAARARAAGANDYLVKPVDA 120 Query: 120 QQFMEVVVDRARRW 133 + FME+V RRW Sbjct: 121 RAFMELVSQTVRRW 134 >gi|300313267|ref|YP_003777359.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 188 Score = 92.4 bits (228), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 49/134 (36%), Positives = 69/134 (51%), Gaps = 1/134 (0%) Query: 1 MKPPIILMIESNGEAVELVRFALWRNNFHCVLQWVDEADAAIEGLLQRRADGEMQLPGMI 60 M P I+MI+ + EA EL RFALWR HC + + A LL R G+ P +I Sbjct: 13 MSFPSIIMIDPSPEAAELARFALWRAGLHCAFRACQDVATARRCLLSGRRSGDCATPSLI 72 Query: 61 FLDPGMMENNGLDFIQAMKAGRDTRAVPIVVFPDSDYPPEMPALLEAGAVEYLLKPETAQ 120 L+ M +GL+ ++ ++A P+VVFP D E A L+AGA YL KP + Sbjct: 73 LLESDMECGDGLELLRELRASSHLAEAPVVVFPSHDTEGEREA-LDAGATAYLPKPIDGE 131 Query: 121 QFMEVVVDRARRWS 134 ++ VV+ RW Sbjct: 132 RYARCVVEMVERWC 145 >gi|300312101|ref|YP_003776193.1| hypothetical protein Hsero_2790 [Herbaspirillum seropedicae SmR1] Length = 144 Score = 60.1 bits (144), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 10/129 (7%) Query: 4 PIILMIESNGEAVELVRFALWRNNFHCVLQWVDEADAAIEGLLQRRADGEMQLPGMIFLD 63 P IL+I+++ +A+E RFALWR++ C ++W D+A+ A LL + P +I LD Sbjct: 8 PRILIIDADLDAIETARFALWRSHLSCRIEWFDDAELANASLLTQALCQLRDQPTLILLD 67 Query: 64 P-GMMENNGLDFIQAMKAGRDTRAVPIVVFP----DSDYPPEMPALLEAGAVEYLLKPET 118 P G + ++ + +P+V+F SD+ E + + Y KP Sbjct: 68 PRNFRGTEGYELLRTLCVYPQLAQIPLVLFTASPISSDFAAE-----QDNRIWYAAKPAR 122 Query: 119 AQQFMEVVV 127 +ME+V Sbjct: 123 PADYMELVT 131 >gi|300311884|ref|YP_003775976.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 151 Score = 56.6 bits (135), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 1/134 (0%) Query: 6 ILMIESNGEAVELVRFALWRNNFHCVLQWVDEADAAIEGLLQRRADGEMQL-PGMIFLDP 64 I++++ + E EL R AL L W +A+ A E Q L P +I LD Sbjct: 8 IILVDDSPEVAELTRLALGSRKLADKLTWFADAELAEEFFFQGEYAQRRDLHPYLILLDL 67 Query: 65 GMMENNGLDFIQAMKAGRDTRAVPIVVFPDSDYPPEMPALLEAGAVEYLLKPETAQQFME 124 + +G DF++ +K+ T +P+V+F SD ++ E GA Y++K ++FM Sbjct: 68 NLPLMSGHDFLKIIKSNAATSHIPVVMFSSSDDQRDINQSYELGANGYVVKSTDPKEFMG 127 Query: 125 VVVDRARRWSKRRR 138 VVD W R R Sbjct: 128 TVVDTGIYWRNRNR 141 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 428,086 Number of extensions: 16767 Number of successful extensions: 98 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 103 Number of HSP's successfully gapped: 5 Length of query: 163 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 85 Effective length of database: 1,250,540 Effective search space: 106295900 Effective search space used: 106295900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)