BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0467.p
         (257 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312530|ref|YP_003776622.1| transmembrane protein [Herbaspi...   326   1e-90
gi|300312046|ref|YP_003776138.1| hypothetical protein Hsero_2734...   174   9e-45

>gi|300312530|ref|YP_003776622.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 269

 Score =  326 bits (835), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 182/256 (71%), Positives = 212/256 (82%), Gaps = 3/256 (1%)

Query: 1   MSMSLPVLISALASSLLLPPVSPFLMCLTGFWLRRRAPR---TGLALMLLGALILLVLST 57
           + M L VL+SALAS+LLLPPVSP L+ L G  LRR APR    GL L++LG   LLVLST
Sbjct: 14  LPMPLSVLVSALASTLLLPPVSPLLLALAGLLLRRHAPRWRRFGLLLIVLGVATLLVLST 73

Query: 58  RIGALWVIRPLEAQYAPLASAGNAQAIVVLGSGRIDQAPEYGGSDDSTAIGMKRLQYAAY 117
           R+G+L +I PLE  Y  L S G AQAIV+LGSGRID+APEYGG DD+ AIGMKRLQY AY
Sbjct: 74  RVGSLLLIAPLENSYPVLRSPGQAQAIVILGSGRIDRAPEYGGLDDANAIGMKRLQYGAY 133

Query: 118 LARRTGLPILVTGGSPDGSPESEAALMARNLQRDFGVPVRWQETRADTTAQNASYSAAML 177
           L R++GLPILVTGG+PDGSPESEAA+MAR L+RDF VPVRWQE R++TT  NA+ SAAML
Sbjct: 134 LHRQSGLPILVTGGNPDGSPESEAAVMARTLERDFAVPVRWQEGRSNTTYDNATLSAAML 193

Query: 178 KADGIERILLVTDSIHMPRAMRVFAYTGLQVQAAPTVFAGRSRPRLTDYLPRAGNLELAS 237
           K  GI RILLVTDS+HMPRAM+VFA TGLQVQAAPTVFAG++R R+TDYLP A +L+LAS
Sbjct: 194 KEAGISRILLVTDSLHMPRAMQVFATTGLQVQAAPTVFAGQARTRVTDYLPNAASLQLAS 253

Query: 238 YALREWVGQLWYSLRR 253
           YALREW+GQLWY +R+
Sbjct: 254 YALREWIGQLWYRVRQ 269


>gi|300312046|ref|YP_003776138.1| hypothetical protein Hsero_2734
           [Herbaspirillum seropedicae SmR1]
          Length = 263

 Score =  174 bits (440), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 109/230 (47%), Positives = 142/230 (61%), Gaps = 7/230 (3%)

Query: 30  GFWL-RRRAP--RTGLALMLLGALILLVLSTRIGALWVIRPLEAQYAPLAS--AGNAQAI 84
           GF L RR AP    G  ++ LG  +L ++     A  ++RPLE  Y  L++  A  AQAI
Sbjct: 24  GFLLWRRPAPIGHIGQVMVALGVALLTLICMPAVADLMVRPLEQGYPVLSAEAARQAQAI 83

Query: 85  VVLGSGRIDQAPEYGGSDDSTAIGMKRLQYAAYLARRTGLPILVTGGSP-DGSPESEAAL 143
           VVL +G +DQAPEY G D    + + RL+YAA L  +TGLP+LV+GG+  + +PE   AL
Sbjct: 84  VVLAAGSLDQAPEYEGRDQPDYVALARLRYAARLQHQTGLPVLVSGGNAREETPEQNKAL 143

Query: 144 -MARNLQRDFGVPVRWQETRADTTAQNASYSAAMLKADGIERILLVTDSIHMPRAMRVFA 202
            MA  L+ DF  PVRW E  ++ T +NA  SAA+L+ADG++R+LLVTD++HMPRAM  FA
Sbjct: 144 AMAEALREDFRTPVRWIEGGSENTEENALRSAALLRADGVQRVLLVTDAMHMPRAMLAFA 203

Query: 203 YTGLQVQAAPTVFAGRSRPRLTDYLPRAGNLELASYALREWVGQLWYSLR 252
             GL   AAPT F    R R    LP A  L  + YA  EW+G  WY LR
Sbjct: 204 QAGLVPTAAPTAFFSLPRWRWPALLPSAEGLRRSWYASYEWLGLGWYRLR 253


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 754,929
Number of extensions: 31270
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 2
Length of query: 257
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 174
Effective length of database: 1,226,865
Effective search space: 213474510
Effective search space used: 213474510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)