BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0466.p (648 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 932 0.0 gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis tra... 550 e-157 gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis tra... 486 e-138 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 419 e-118 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 397 e-111 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 932 bits (2410), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/616 (85%), Positives = 547/616 (88%), Gaps = 21/616 (3%) Query: 1 MGQLSFSKKLWLPLGLSLIALLAISIFSAYMVRDVRLEERKNDLTNIGQTALSMVKAYGA 60 MGQLSF+KKLWLPL LSLIALLAISIFSA MVR++RLEERK DLTNIGQTALS+VK YGA Sbjct: 1 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA 60 Query: 61 LAESGALTKEEAQKRAKAAMKSLRYGTDGYFSISTSAQIIVMHPIKTELDGKDLTNFKDP 120 LA+SGAL+KE+AQK AK A+KSLRYGTDGYFSISTS QIIVMHPIKTELDGKDL+NFKDP Sbjct: 61 LADSGALSKEDAQKLAKQAIKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLSNFKDP 120 Query: 121 AGKNLFVEITKAGSQPGGSFVNYLWPKVGAAEPVPKTSFVIAYQPWDWNLTTGAYMDDIN 180 AG NLFVEITKAGS+P G FV+YLWPKVGAAEPVPKTSFVIAY+PWDWNLTTGAYMDDIN Sbjct: 121 AGNNLFVEITKAGSKPEGGFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDIN 180 Query: 181 AAFLRTLTQMAILFAVVAAALVALVIVINRGILRTIGGDPAKAAEVANRIAQGDLTPNIE 240 AAFLRTL QMA+LFA V+AALVALVIVIN GILRTIGGDPA+AAEVANRIAQGDLTPNIE Sbjct: 181 AAFLRTLWQMALLFAAVSAALVALVIVINHGILRTIGGDPAQAAEVANRIAQGDLTPNIE 240 Query: 241 TAPGDQSSLLYAVRSMRDSLLSTIANIKTSADTIATASQEIASGNLDLSSRTEQQAGSIE 300 TAPGD SSLLYAVRSMRDSLLSTI NIK SA TIA+ASQEIASGNLDLS RTEQQAGSIE Sbjct: 241 TAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIE 300 Query: 301 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVGQVVQTMEGITDSSRKIAD 360 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVV QVVQTMEGITDSSRKIAD Sbjct: 301 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIAD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKSLIDD 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIK+LIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDD 420 Query: 421 SVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG 480 SVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG Sbjct: 421 SVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG 480 Query: 481 TQQNAALVEQAAAAAQSLQDQATTLAGLVGRFQIDGSQARTVPAAAAAVKPAARPSPAAS 540 TQQNAALVEQAAAAAQSLQDQA TLAGLVGRF +DGSQA P A A KPA RP Sbjct: 481 TQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQASIAPTAPQAAKPATRP----- 535 Query: 541 ASAAPRKPTAAPAAR-------------ATIPAPKAAPAKPAAAAAPKADAPAAKPAGK- 586 P P A PA R A+ A A K AAA KA+APAAKP GK Sbjct: 536 --VQPTTPPATPALRKPAAPQPARPALAASKAAAPKAAPKTAAAQPAKAEAPAAKPTGKS 593 Query: 587 PSRLPAGDDEGDWETF 602 PSRLPAG+DEGDWETF Sbjct: 594 PSRLPAGEDEGDWETF 609 >gi|300313067|ref|YP_003777159.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 532 Score = 550 bits (1417), Expect = e-157, Method: Compositional matrix adjust. Identities = 301/529 (56%), Positives = 383/529 (72%), Gaps = 3/529 (0%) Query: 1 MGQLSFSKKLWLPLGLSLIALLAISIFSAYMVRDVRLEERKNDLTNIGQTALSMVKAYGA 60 M LS KKLWLPL S +ALL +S++ AY RD+++ ER+ L ++ + A + + Y Sbjct: 1 MNNLSLKKKLWLPLVFSWMALLFLSVWHAYQTRDLQIAERERGLQDVTEMAYTTIAGYAK 60 Query: 61 LAESGALTKEEAQKRAKAAMKSLRYGTDGYFSISTSAQIIVMHPIKTELDGKDLTNFKDP 120 L G L++E+AQK A A ++ RY DGY ++ + +IVMHPI ++LDG+++ +FKD Sbjct: 61 LESDGKLSREDAQKAAIARIRDQRYTGDGYVTLVDANSVIVMHPINSKLDGRNMLDFKDA 120 Query: 121 AGKNLFVEITKAGSQPGGS-FVNYLWPKVGAAEPVPKTSFVIAYQPWDWNLTTGAYMDDI 179 G L+ I GS G ++ Y WP+ G+ +P PK FV ++PW+W+L Y DDI Sbjct: 121 KGNELYKMIAATGSSGAGKGYLEYWWPRPGSDQPSPKMGFVKRFKPWNWDLICSVYSDDI 180 Query: 180 NAAFLRTLTQMAILFAVVAAALVALVIVINRGILRTIGGDPAKAAEVANRIAQGDLTPNI 239 A F R L Q ++ + L + +++R I R+IGG+P +AAE+A +IA GDLT I Sbjct: 181 QADFRRALIQAVVVLIGLGVLLSLIAGMVSRNIFRSIGGEPGEAAEMARKIAAGDLTGVI 240 Query: 240 ETAPGDQSSLLYAVRSMRDSLLSTIANIKTSADTIATASQEIASGNLDLSSRTEQQAGSI 299 T GD+ SL+ AV RD L+ T+ IK + ++I T+ EIA+GN+DLS+RTEQQAGS+ Sbjct: 241 HTTQGDEHSLVAAVAYTRDRLVDTVHGIKQATESIKTSVDEIATGNMDLSNRTEQQAGSL 300 Query: 300 EETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVGQVVQTMEGITDSSRKIA 359 EETAS MEELTATVKQNA NA+ ANQLA A++VAIQGG VVGQVVQTME I SSRKI Sbjct: 301 EETASTMEELTATVKQNAANAQHANQLASGAAQVAIQGGEVVGQVVQTMESINASSRKIV 360 Query: 360 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKSLID 419 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LID Sbjct: 361 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKQLID 420 Query: 420 DSVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDE 479 DSV KVD G+ LV++AG TM EVV+S++ V+ +V EI++AS EQS+GI +VG AITQMDE Sbjct: 421 DSVGKVDAGTHLVQRAGQTMQEVVSSIQGVSTVVSEIATASHEQSSGIEQVGEAITQMDE 480 Query: 480 GTQQNAALVEQAAAAAQSLQDQATTLAGLVGRFQIDGSQARTVPAAAAA 528 TQQNAALVEQAAAAAQSLQDQA L LVG F ++ + RT PA +A Sbjct: 481 TTQQNAALVEQAAAAAQSLQDQADKLVRLVGVFTLE--RGRTAPAVTSA 527 >gi|300311479|ref|YP_003775571.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 603 Score = 486 bits (1252), Expect = e-138, Method: Compositional matrix adjust. Identities = 308/608 (50%), Positives = 395/608 (64%), Gaps = 17/608 (2%) Query: 5 SFSKKLWLPLGLSLIALLAISIFSAYMVRDVRLEERKNDLTNIGQTALSMVKAYGALAES 64 S +L L + LL ++ +SA+ R+ ++ERK+ L + + A +VK+Y A + Sbjct: 3 SLKAQLLSALVVMWAGLLLLAAWSAFSARENMIDERKDGLRRVVEAANGVVKSYVADVAA 62 Query: 65 GALTKEEAQKRAKAAMKSLRYGTDGYFSISTSAQIIVMHPIKTELDGKDLTNFKDPAGKN 124 G ++KEEAQK A + ++RY D Y I S +++M P + GK++ + KD GK Sbjct: 63 GRVSKEEAQKNALERIAAMRYDGDNYLFIFDSRPVVLMLPSNKAMVGKNVADRKDSEGKA 122 Query: 125 LFVEITKAGSQPGGSFVNYL--WPKVGAAEPVPKTSFVIAYQPWDWNLTTGAYMDDINAA 182 +VE+ K G + FV Y+ P + PK S+V+ Q WDW + TG ++ D+ A Sbjct: 123 YYVEMMKVGQEKQHGFVQYMGRLPGTDDSNRTPKMSYVVHNQDWDWFIVTGVFLSDVQAQ 182 Query: 183 FLRTLTQMAILFAVVAAALVALVIVINRGILRTIGGDPAKAAEVANRIAQGDLTPNIETA 242 F L ++ + VV + +++ I R I ++GG+PA A ++A RIA GDLT ++T Sbjct: 183 FRADLFRLLGILLVVGVVVSVMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQTR 242 Query: 243 PGDQSSLLYAVRSMRDSLLSTIANIKTSADTIATASQEIASGNLDLSSRTEQQAGSIEET 302 PGD SLLYA+ +MR+ L I I+ D I ++EIA+GNLDLSSRTE+QAGS+ T Sbjct: 243 PGDTRSLLYAMATMRERLAGVIKGIRQGTDAIDIGAREIAAGNLDLSSRTEEQAGSLATT 302 Query: 303 ASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVGQVVQTMEGITDSSRKIADII 362 AS M+ LTATVKQNADNARQA QLA SAS++A +GG VVGQVVQTMEGIT SSRKIADII Sbjct: 303 ASNMDGLTATVKQNADNARQAGQLAHSASDIATRGGEVVGQVVQTMEGITGSSRKIADII 362 Query: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKSLIDDSV 422 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK+LI+DSV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKALIEDSV 422 Query: 423 AKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQ 482 +V +GS V +AG TM EVVA+VR +TDIVGEIS+AS+EQ GI +V AI +MD+ TQ Sbjct: 423 QRVGSGSDQVARAGQTMGEVVAAVRSLTDIVGEISAASEEQRNGIEQVNLAIGEMDQVTQ 482 Query: 483 QNAALVEQAAAAAQSLQDQATTLAGLVGRFQIDGSQARTVPAAAAAVKPAA--------R 534 QNAALVEQAAAAA SL++QA L V F++DG + + P A++ A + Sbjct: 483 QNAALVEQAAAAAGSLEEQARRLKAAVSTFRVDGEENLSAPVASSLATATATATPTAVRK 542 Query: 535 PSPAASASAAPRKPTAAPAARATIPAPKAAPAKPAAAAAPKADAPAAKPAGKPSRLPAGD 594 AA+ A KP A P K A A KA AAKPA LPAGD Sbjct: 543 APAAAAIPVASAKPLAGK------PLTKPAGGAAPLPAPAKAAPAAAKPASAAKALPAGD 596 Query: 595 DEGDWETF 602 D GDWETF Sbjct: 597 D-GDWETF 603 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 419 bits (1077), Expect = e-118, Method: Compositional matrix adjust. Identities = 220/319 (68%), Positives = 263/319 (82%) Query: 202 VALVIVINRGILRTIGGDPAKAAEVANRIAQGDLTPNIETAPGDQSSLLYAVRSMRDSLL 261 + + +++ RG+L+ +GG+P AA++A +IA GDLT N++T GD SSLL+A+++MRDSL+ Sbjct: 200 ILIAVLLTRGLLKQLGGEPTYAAQIAQQIADGDLTANVQTKTGDNSSLLFAIKNMRDSLV 259 Query: 262 STIANIKTSADTIATASQEIASGNLDLSSRTEQQAGSIEETASAMEELTATVKQNADNAR 321 S +A ++ TI AS EIASGNLDLSSRTEQQA S+EETASAMEEL TVKQNADNA+ Sbjct: 260 SIVAQVRQGTFTIEQASSEIASGNLDLSSRTEQQASSLEETASAMEELMTTVKQNADNAK 319 Query: 322 QANQLAESASEVAIQGGSVVGQVVQTMEGITDSSRKIADIIGVIDGIAFQTNILALNAAV 381 QA+QLA SASEVA QGG VV QVV TM+GI SSRKI DII VIDGIAFQTNILALNAAV Sbjct: 320 QASQLAVSASEVASQGGEVVAQVVTTMDGINASSRKIVDIISVIDGIAFQTNILALNAAV 379 Query: 382 EAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKSLIDDSVAKVDTGSKLVEQAGATMTE 441 EAARAGEQGRGFAVVASEVRSLAQRSA+AAKEI LI+DSV++++ GS LVEQAG TM Sbjct: 380 EAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGSSLVEQAGQTMEN 439 Query: 442 VVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQQNAALVEQAAAAAQSLQDQ 501 VV SV+RVTD+V EIS ASQEQS GI +V AIT MDE TQQN+ALVE+AAAAA S+++Q Sbjct: 440 VVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVEEAAAAANSMKEQ 499 Query: 502 ATTLAGLVGRFQIDGSQAR 520 A L+GLV F++D QAR Sbjct: 500 AGALSGLVATFRLDAQQAR 518 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 397 bits (1019), Expect = e-111, Method: Compositional matrix adjust. Identities = 216/311 (69%), Positives = 252/311 (81%), Gaps = 8/311 (2%) Query: 177 DDINAAFLR--TLTQMAILFAVVAAALVALVIVINRGILRTIGGDPAKAAEVANRIAQGD 234 DD+ R TL + +L A+V AL L +++ R + R + +A VA R+AQGD Sbjct: 179 DDMAEQVYRSATLWIIGLLAAIVVIAL-GLAVMVARAVSRPLN----EAVAVAERVAQGD 233 Query: 235 LTPNIETAPGDQSSLL-YAVRSMRDSLLSTIANIKTSADTIATASQEIASGNLDLSSRTE 293 LT +I D++ +L +++R+M DSL + ++T DTI TASQEIA+GNLDLSSRTE Sbjct: 234 LTMDIRATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTE 293 Query: 294 QQAGSIEETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVGQVVQTMEGITD 353 +QAGS+EETASAMEELTATVKQNADNARQANQLA SAS++A QGG+VVGQVVQTMEGIT+ Sbjct: 294 EQAGSLEETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITE 353 Query: 354 SSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKE 413 SS +IADII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKE Sbjct: 354 SSNRIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKE 413 Query: 414 IKSLIDDSVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRA 473 IK LIDDSV KV GS+LVE+AGATM+EVVASVRRVTD+V EIS+AS EQS GI E+ RA Sbjct: 414 IKQLIDDSVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRA 473 Query: 474 ITQMDEGTQQN 484 ITQMDE TQQN Sbjct: 474 ITQMDEVTQQN 484 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.126 0.346 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,309,979 Number of extensions: 44158 Number of successful extensions: 542 Number of sequences better than 1.0e-08: 71 Number of HSP's gapped: 281 Number of HSP's successfully gapped: 73 Length of query: 648 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 557 Effective length of database: 1,188,985 Effective search space: 662264645 Effective search space used: 662264645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 134 (56.2 bits)