BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0463.p
         (213 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312532|ref|YP_003776624.1| hypothetical protein Hsero_3235...   326   8e-91
gi|300312534|ref|YP_003776626.1| hypothetical protein Hsero_3237...   136   1e-33

>gi|300312532|ref|YP_003776624.1| hypothetical protein Hsero_3235
           [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  326 bits (836), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 182/200 (91%), Positives = 193/200 (96%)

Query: 1   MKTDDLISMMASGVAPVDRRLPVKQMAQALVLGGLGSLLLMLKIYGLRPDLAVMLGVPLF 60
           MKTDDLISMMASGV PVDRRLPVKQMAQAL+LGGLG+LLLMLKIYGLRPDL +MLGVPLF
Sbjct: 1   MKTDDLISMMASGVTPVDRRLPVKQMAQALLLGGLGALLLMLKIYGLRPDLGLMLGVPLF 60

Query: 61  WIKLAFPTTLAVGAMLVLRRLVRPGLRVGANWAGIALPAMAVWLGGAAVLLSAPVAQQLP 120
           WIKLAFPTTLAVGA+LVLRRL+RPGLRVG  WAGIALP +AVW GGA VLLSAP+AQ+LP
Sbjct: 61  WIKLAFPTTLAVGALLVLRRLMRPGLRVGVRWAGIALPGLAVWAGGALVLLSAPLAQRLP 120

Query: 121 LLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLSGAVAGLLAGATATMVYCLHC 180
           LLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRL+GA+AGLLAGATATMVYCLHC
Sbjct: 121 LLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRLRLTGAIAGLLAGATATMVYCLHC 180

Query: 181 PEMGVPFWGIWYFLGILIPA 200
           PEMGVPFWG+WYFLGILIPA
Sbjct: 181 PEMGVPFWGVWYFLGILIPA 200


>gi|300312534|ref|YP_003776626.1| hypothetical protein Hsero_3237
           [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  136 bits (343), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/183 (46%), Positives = 116/183 (63%), Gaps = 1/183 (0%)

Query: 32  LGGLGSLLLMLKIYGLRPDLAVMLGVPLFWIKLAFPTTLAVGAMLVLRRLVRPGLRVG-A 90
           +G +G+ LL+  +YG+R DL  +L  PLFW+K++FP        L   RL RPG+R+G  
Sbjct: 31  VGLMGAALLLALLYGVRSDLRTLLQQPLFWMKVSFPLAALSAGQLAATRLARPGMRIGLG 90

Query: 91  NWAGIALPAMAVWLGGAAVLLSAPVAQQLPLLMGISWRSCPFNIALLSIPLFIGIFWAVR 150
             A + LP   +WL G   L  AP +Q+L LL+G SW  C  N+ALLS+P    + W +R
Sbjct: 91  PAAALLLPPCVLWLAGGVWLALAPPSQRLELLLGSSWEVCSANVALLSLPTLATMLWFLR 150

Query: 151 GMAPTRLRLSGAVAGLLAGATATMVYCLHCPEMGVPFWGIWYFLGILIPAVLGLLLGPRL 210
           G+APT+LR +GA AGL+AGA   +VY L+C EM  PFWG+WY LG+ +P   G   GP L
Sbjct: 151 GLAPTQLRAAGAAAGLVAGAQGVLVYSLYCVEMAPPFWGVWYVLGVALPTAAGAWCGPWL 210

Query: 211 LRW 213
           LRW
Sbjct: 211 LRW 213


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.145    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 559,382
Number of extensions: 18096
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 2
Length of query: 213
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 132
Effective length of database: 1,236,335
Effective search space: 163196220
Effective search space used: 163196220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)