BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0461.p
         (236 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312534|ref|YP_003776626.1| hypothetical protein Hsero_3237...   286   1e-78
gi|300312532|ref|YP_003776624.1| hypothetical protein Hsero_3235...   133   1e-32

>gi|300312534|ref|YP_003776626.1| hypothetical protein Hsero_3237
           [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  286 bits (731), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 188/231 (81%), Positives = 197/231 (85%), Gaps = 18/231 (7%)

Query: 6   MLATGTGEPPGPVQRSLVRNVAARMAVALALGLMGAALLLAILYGVRSDLRELLQQPLFW 65
           MLA GTG+  GP QRSL RN AARMAVALA+GLMGAALLLA+LYGVRSDLR LLQQPLFW
Sbjct: 1   MLAAGTGDSSGPGQRSLARNAAARMAVALAVGLMGAALLLALLYGVRSDLRTLLQQPLFW 60

Query: 66  MKVSFPLAALLAGQLAASRLALPGMRMGLAPAAGLLLPPALLWLAGGSWLALAPPSQRLD 125
           MKVSFPLAAL AGQLAA+RLA PGMR+GL PAA LLLPP +LWLAGG WLALAPPSQRL+
Sbjct: 61  MKVSFPLAALSAGQLAATRLARPGMRIGLGPAAALLLPPCVLWLAGGVWLALAPPSQRLE 120

Query: 126 LLLGSSWEVCSANVALLSLPTLASMLWFLRGMAPTQLLAGAVAGLVAGAQGVLVNRAAGA 185
           LLLGSSWEVCSANVALLSLPTLA+MLWFLRG+APTQL                  RAAGA
Sbjct: 121 LLLGSSWEVCSANVALLSLPTLATMLWFLRGLAPTQL------------------RAAGA 162

Query: 186 VAGLVAGAQGVLVYSLYCVEMAPPFWGVWYVLGVALPTGAGALCGPWLLRW 236
            AGLVAGAQGVLVYSLYCVEMAPPFWGVWYVLGVALPT AGA CGPWLLRW
Sbjct: 163 AAGLVAGAQGVLVYSLYCVEMAPPFWGVWYVLGVALPTAAGAWCGPWLLRW 213


>gi|300312532|ref|YP_003776624.1| hypothetical protein Hsero_3235
           [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  133 bits (335), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/224 (42%), Positives = 129/224 (57%), Gaps = 26/224 (11%)

Query: 2   ELVNMLATGTGEPPGPVQRSLVRNVAARMAVALALGLMGAALLLAILYGVRSDLRELLQQ 61
           +L++M+A+G      PV R   R    +MA AL LG +GA LL+  +YG+R DL  +L  
Sbjct: 5   DLISMMASGVT----PVDR---RLPVKQMAQALLLGGLGALLLMLKIYGLRPDLGLMLGV 57

Query: 62  PLFWMKVSFPLAALLAGQLAASRLALPGMRMGLAPAAGLLLPPALLWLAGGSWLALAPPS 121
           PLFW+K++FP    +   L   RL  PG+R+G+   AG+ LP   +W  G   L  AP +
Sbjct: 58  PLFWIKLAFPTTLAVGALLVLRRLMRPGLRVGVR-WAGIALPGLAVWAGGALVLLSAPLA 116

Query: 122 QRLDLLLGSSWEVCSANVALLSLPTLASMLWFLRGMAPTQLLAGAVAGLVAGAQGVLVNR 181
           QRL LL+G SW  C  N+ALLS+P    + W +RGMAPT+L                  R
Sbjct: 117 QRLPLLMGISWRSCPFNIALLSIPLFIGIFWAVRGMAPTRL------------------R 158

Query: 182 AAGAVAGLVAGAQGVLVYSLYCVEMAPPFWGVWYVLGVALPTGA 225
             GA+AGL+AGA   +VY L+C EM  PFWGVWY LG+ +P  A
Sbjct: 159 LTGAIAGLLAGATATMVYCLHCPEMGVPFWGVWYFLGILIPAAA 202


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 465,424
Number of extensions: 10092
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 2
Length of query: 236
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 154
Effective length of database: 1,231,600
Effective search space: 189666400
Effective search space used: 189666400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)