BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0457.p
         (251 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312537|ref|YP_003776629.1| hypothetical protein Hsero_3240...   393   e-111

>gi|300312537|ref|YP_003776629.1| hypothetical protein Hsero_3240
           [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score =  393 bits (1009), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/251 (75%), Positives = 211/251 (84%)

Query: 1   MNAPDHRYYASFLQALLNGQSDDPGVAALLAQPAFAIYRNTVFKGCVDALLANYPAVHRL 60
           MNAP  RYY +FLQA+L G S+D  VAALLAQPAFA+YRNT+FKGCVDAL+ANYP V RL
Sbjct: 1   MNAPATRYYDAFLQAILEGHSNDDAVAALLAQPAFAVYRNTIFKGCVDALVANYPTVRRL 60

Query: 61  VGSPWMESAAQAFAREHLPQEASLICYGAGFADFLATLEAARELPYLPGVATLDRCWTEA 120
           VGS WMESAA  FAR HLP++ASLI YG GF++FL T+EA RELPYLPGVA LDRCWTE+
Sbjct: 61  VGSAWMESAALQFARHHLPRQASLIAYGEGFSEFLCTVEAVRELPYLPGVAALDRCWTES 120

Query: 121 HLAADDPLLDVSALHTALAAGQDIRLVPHAASRWHHDPQHPVYTIWSINRSDADDTEIAP 180
           HLAAD P+L V+ALH AL AGQD+ LVPHA+SRWHHD QHPVYTIWS NRS+    E+AP
Sbjct: 121 HLAADQPMLAVAALHIALEAGQDVTLVPHASSRWHHDMQHPVYTIWSANRSEDGQAELAP 180

Query: 181 EWQGEGALLTRPHGQVQWQPLSAGASGFLDACRDGCGIASAAGQALAREPGLEIGTMLGQ 240
           EW+GEGALLTRPH QVQWQPLS GA  FLDACRDG  IA AAGQAL  EP L+I TMLGQ
Sbjct: 181 EWRGEGALLTRPHAQVQWQPLSLGACRFLDACRDGFSIARAAGQALEHEPDLDIATMLGQ 240

Query: 241 LIQADAFTSFH 251
           LIQADAFTSF+
Sbjct: 241 LIQADAFTSFY 251


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 916,835
Number of extensions: 41397
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,226,865
Effective search space: 206113320
Effective search space used: 206113320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)