BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0455.p (373 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis tra... 135 7e-33 gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis tra... 129 4e-31 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 126 4e-30 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 120 2e-28 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 117 2e-27 >gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 135 bits (339), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 113/378 (29%), Positives = 192/378 (50%), Gaps = 19/378 (5%) Query: 1 MKLRTGLMLVLGLLTLALWLAAGMAWQGARSASRATVALIELSDRHIQPLHDTERLFLNT 60 + +R LM L L + + + AG+ A+ AT + E+++R + ++D + T Sbjct: 4 LTVRFSLMSALALFSCMIVVGAGVGIFALGRANHATEYVHEITERAL-LINDAYKDTTRT 62 Query: 61 LINMDNAYINLV-KGDEIKSNDYSRRASAALQDARKAFDGYR-----QGLTPSALAEPEA 114 Y L+ KGD+ + + A + + K D Y +G P+ + E Sbjct: 63 RAAHGRMYATLMEKGDQAVIDSALKSAEMTYERSLKYLDEYAKLPDLEGQDPAT--KTEL 120 Query: 115 LRVSAAYDSYIK----VLNLREVALYDVSLEDYAAATVSAEAADREFAATLRAVIQHAEQ 170 L + A + +K +L + A Y ++ +S A F+ L A + A + Sbjct: 121 LESAKALNEVLKKATDLLKAGDAAGYSQLNNNF----ISKGGA--RFSTALDAYQKRAME 174 Query: 171 VKDGLRLASERRSDQATLLAVAMLAASVLLIAICWLLFDRLLLQPLKRAADHFDRIADGD 230 + D + +R + L V L ++ L+ L ++L PL RA D +A+GD Sbjct: 175 LNDNVTTQRQREYNLVVWLVVTGLIGAMFLVVGVHFLLRNIVLTPLNRAVHLLDLVANGD 234 Query: 231 LSQAVQGISGNEIGVLLAALQRMQHGVALTVGDIREATRDLHHGAADIAQGNGELAQRTQ 290 L+ V+ S NEIG L +A++ MQ + TV +R ++ + A +IA GN +L+ RT+ Sbjct: 235 LTTKVEVASSNEIGRLFSAIRSMQQALLTTVSRVRSSSDSIDTSAKEIAAGNMDLSSRTE 294 Query: 291 AQASTLETTAATLERLSGAVRNNAQNAERTNALAAAAASDAERGGQVMSGIAGAMAQVTA 350 QAS+LE TAA++E L+G V+ NA+NA + N LA +A+S A +GG+V+S + M + Sbjct: 295 QQASSLEETAASMEELTGTVKQNAENALQANQLAHSASSTASKGGEVVSQVVDTMQAIND 354 Query: 351 GAGRISDIVSLIDGIAFR 368 + +I DI+S+IDGIAF+ Sbjct: 355 SSRKIVDIISVIDGIAFQ 372 >gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 129 bits (324), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 73/191 (38%), Positives = 116/191 (60%) Query: 178 ASERRSDQATLLAVAMLAASVLLIAICWLLFDRLLLQPLKRAADHFDRIADGDLSQAVQG 237 AS R + + ++ + A +LL W R + +P++RA HFD IA GDL++AV Sbjct: 179 ASMARYEASRNFSIVAIVAGLLLAFYSWWSLRRAIGEPMQRALRHFDAIASGDLTEAVHV 238 Query: 238 ISGNEIGVLLAALQRMQHGVALTVGDIREATRDLHHGAADIAQGNGELAQRTQAQASTLE 297 S NE+G LL L+RMQ ++ TV +R + + +IA GN +L+ RT+ QA++LE Sbjct: 239 HSRNEMGQLLEGLKRMQESLSRTVQAVRSGSDAISTATREIASGNLDLSSRTEQQAASLE 298 Query: 298 TTAATLERLSGAVRNNAQNAERTNALAAAAASDAERGGQVMSGIAGAMAQVTAGAGRISD 357 TA+++E L+ V++NA NA + LA A++ A G V+ + M ++ A + +I+D Sbjct: 299 ETASSMEELTSTVKHNADNARQATTLAVNASTIAADGNAVVGRVVQTMEEIRASSAKITD 358 Query: 358 IVSLIDGIAFR 368 IVS+IDGIAF+ Sbjct: 359 IVSIIDGIAFQ 369 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 126 bits (316), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 91/272 (33%), Positives = 150/272 (55%), Gaps = 23/272 (8%) Query: 119 AAYDSYI-----KVLNLREVALYDVSLE-DYAAATVSAEAADREFAA--------TLRAV 164 AAY++ I KVL + + LE D A +SAE + E A T R++ Sbjct: 101 AAYEAQISEAEEKVLYEKFSKSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSM 160 Query: 165 IQHAEQVKDGLRLASERRSD--------QATLLAVAMLAASVLLIAICWLLFDRLLLQPL 216 I++ +++ + A +RSD ATL + +LAA V++ ++ R + +PL Sbjct: 161 IENMDEIIK-VNDAGSKRSDDMAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPL 219 Query: 217 KRAADHFDRIADGDLSQAVQGISGNEIGVLLAALQRMQHGVALTVGDIREATRDLHHGAA 276 A +R+A GDL+ ++ S +E G+L+ +L+ M + VG++R T + + Sbjct: 220 NEAVAVAERVAQGDLTMDIRATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQ 279 Query: 277 DIAQGNGELAQRTQAQASTLETTAATLERLSGAVRNNAQNAERTNALAAAAASDAERGGQ 336 +IA GN +L+ RT+ QA +LE TA+ +E L+ V+ NA NA + N LAA+A+ A +GG Sbjct: 280 EIATGNLDLSSRTEEQAGSLEETASAMEELTATVKQNADNARQANQLAASASDIATQGGA 339 Query: 337 VMSGIAGAMAQVTAGAGRISDIVSLIDGIAFR 368 V+ + M +T + RI+DI+S+IDGIAF+ Sbjct: 340 VVGQVVQTMEGITESSNRIADIISVIDGIAFQ 371 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 67/184 (36%), Positives = 109/184 (59%) Query: 185 QATLLAVAMLAASVLLIAICWLLFDRLLLQPLKRAADHFDRIADGDLSQAVQGISGNEIG 244 QA L + +AA + L + + RL+ +PL+ A R+A GDL+ ++ +E G Sbjct: 188 QARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEPAGKDETG 247 Query: 245 VLLAALQRMQHGVALTVGDIREATRDLHHGAADIAQGNGELAQRTQAQASTLETTAATLE 304 LL AL+ M + VG +R T+ + + +IA GN +L+ RT+ QAS+LE TA+ +E Sbjct: 248 QLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLEETASAME 307 Query: 305 RLSGAVRNNAQNAERTNALAAAAASDAERGGQVMSGIAGAMAQVTAGAGRISDIVSLIDG 364 L+ V+ NA NA + N LA +A+ A +GG V++ + M + A + +I+DI+ +IDG Sbjct: 308 ELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIADIIGVIDG 367 Query: 365 IAFR 368 IAF+ Sbjct: 368 IAFQ 371 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 117 bits (292), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/188 (38%), Positives = 115/188 (61%), Gaps = 2/188 (1%) Query: 182 RSDQATLLAVAMLAASVLLIAICWLLFDRLLLQPLKRAADHFDRIADGDLSQAVQGISGN 241 RS ++ LLA+ + VL A+ WLL R + +PL +A + +A GDL+ + S + Sbjct: 184 RSGRSMLLALGAIEI-VLGAALAWLLT-RSITRPLNQAVTIAETVAAGDLTSRIDSSSRD 241 Query: 242 EIGVLLAALQRMQHGVALTVGDIREATRDLHHGAADIAQGNGELAQRTQAQASTLETTAA 301 E G LLAAL+ M + VG +R T ++ + +IA GN +L+ RT+AQA +LE TA+ Sbjct: 242 ETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETAS 301 Query: 302 TLERLSGAVRNNAQNAERTNALAAAAASDAERGGQVMSGIAGAMAQVTAGAGRISDIVSL 361 +E+L+ V+ NA NA + N LAA+A+ A +GG V+ + M + A + +I+DI+ + Sbjct: 302 AMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIGV 361 Query: 362 IDGIAFRP 369 IDGIAF+ Sbjct: 362 IDGIAFQT 369 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.130 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 864,114 Number of extensions: 30492 Number of successful extensions: 292 Number of sequences better than 1.0e-08: 63 Number of HSP's gapped: 266 Number of HSP's successfully gapped: 63 Length of query: 373 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 286 Effective length of database: 1,207,925 Effective search space: 345466550 Effective search space used: 345466550 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)