BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0454.p (165 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis tra... 141 3e-35 gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis tra... 134 5e-33 gi|300311012|ref|YP_003775104.1| methyl-accepting chemotaxis tra... 125 2e-30 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 123 7e-30 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 122 1e-29 >gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 547 Score = 141 bits (355), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 87/166 (52%), Positives = 114/166 (68%), Gaps = 13/166 (7%) Query: 1 LNASVEAARAGSQGRGFAVVASEVRSLALRSAEAAREVKDLIAASIGSVDQAAQQVKEAD 60 LNA+VEAARAG QGRGFAVVASEVRSLA RSA AA+E+K+LI S+ V +Q V +A Sbjct: 382 LNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEIKELIGESMSHVGAGSQLVSDAG 441 Query: 61 QAIVQI---VQSFGNVMTTVNEIAMATREQAEGISQVSLSLAEMDRATQQNAALVEQTAA 117 Q + QI VQ FG +M N IA AT+EQ GI Q++ ++ +MD+ TQQNAALVE+ +A Sbjct: 442 QQMAQIVASVQRFGEIM---NNIATATQEQGSGIEQINTAMVQMDQVTQQNAALVEEASA 498 Query: 118 AADALTERAATLTASVAVF------TLTAP-QAMALAGTGGSPALP 156 AA +L+++A+ L V+VF +L AP + AL T G P +P Sbjct: 499 AAQSLSQQASGLLKVVSVFKIRQDRSLAAPLEQAALTRTPGMPGMP 544 >gi|300312783|ref|YP_003776875.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 134 bits (336), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 82/159 (51%), Positives = 111/159 (69%), Gaps = 1/159 (0%) Query: 1 LNASVEAARAGSQGRGFAVVASEVRSLALRSAEAAREVKDLIAASIGSVDQAAQQVKEAD 60 LNA+VEAARAG QGRGFAVVASEVRSLA RSA AA+E+ +LI S+ +++ + V++A Sbjct: 375 LNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEITELINDSVSQIERGSSLVEQAG 434 Query: 61 QAIVQIVQSFGNVMTTVNEIAMATREQAEGISQVSLSLAEMDRATQQNAALVEQTAAAAD 120 Q + +V S V V EI+MA++EQ+ GI+QV+ ++ MD ATQQN+ALVE+ AAAA+ Sbjct: 435 QTMENVVNSVKRVTDVVAEISMASQEQSHGITQVNTAITHMDEATQQNSALVEEAAAAAN 494 Query: 121 ALTERAATLTASVAVFTLTAPQAMALAGTGGS-PALPHH 158 ++ E+A L+ VA F L A QA + S PA HH Sbjct: 495 SMKEQAGALSGLVATFRLDAQQARQSGYSQASAPAHAHH 533 >gi|300311012|ref|YP_003775104.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 550 Score = 125 bits (314), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/146 (54%), Positives = 105/146 (71%) Query: 1 LNASVEAARAGSQGRGFAVVASEVRSLALRSAEAAREVKDLIAASIGSVDQAAQQVKEAD 60 LNA+VEAARAG QGRGFAVVASEVR+LA RSA+AARE+K LI S+ VD +V+EA Sbjct: 382 LNAAVEAARAGEQGRGFAVVASEVRTLAHRSAQAAREIKTLIEDSVSKVDAGYSKVQEAA 441 Query: 61 QAIVQIVQSFGNVMTTVNEIAMATREQAEGISQVSLSLAEMDRATQQNAALVEQTAAAAD 120 AI ++V +V VNEI ++T+EQ +GISQV ++ ++D TQQNAALVEQ+AAAA+ Sbjct: 442 DAIGEVVTQVRHVSGLVNEIGVSTQEQTQGISQVGTAVQQLDDVTQQNAALVEQSAAAAE 501 Query: 121 ALTERAATLTASVAVFTLTAPQAMAL 146 +L+ +A+ L + F L + AL Sbjct: 502 SLSAQASKLLDLMGAFKLAGREEQAL 527 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 123 bits (309), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 84/156 (53%), Positives = 112/156 (71%), Gaps = 2/156 (1%) Query: 1 LNASVEAARAGSQGRGFAVVASEVRSLALRSAEAAREVKDLIAASIGSVDQAAQQVKEAD 60 LNA+VEAARAG QGRGFAVVASEVRSLA RSA AA+E+K LI S+ VD ++ V A Sbjct: 374 LNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKVDDGSRLVARAG 433 Query: 61 QAIVQIVQSFGNVMTTVNEIAMATREQAEGISQVSLSLAEMDRATQQNAALVEQTAAAAD 120 + ++VQS V V EI +A++EQ++GI QV+L++ +D TQQNAALVEQ AAAA Sbjct: 434 DTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQNAALVEQAAAAAR 493 Query: 121 ALTERAATLTASVAVFTLTAP-QAMALA-GTGGSPA 154 ++ ++AA+LT +V+VF L Q +A+A G SP+ Sbjct: 494 SMQDQAASLTDAVSVFRLEDDAQVLAVAVQRGTSPS 529 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 122 bits (306), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/147 (55%), Positives = 105/147 (71%) Query: 1 LNASVEAARAGSQGRGFAVVASEVRSLALRSAEAAREVKDLIAASIGSVDQAAQQVKEAD 60 LNA+VEAARAG QGRGFAVVASEVRSLA RSA AA+E+K LI+ S+ V+ + V EA Sbjct: 379 LNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALISDSVAKVESGSLLVNEAG 438 Query: 61 QAIVQIVQSFGNVMTTVNEIAMATREQAEGISQVSLSLAEMDRATQQNAALVEQTAAAAD 120 + +IV+S V +NEI+ A EQ GI QVS ++ +MD+ TQQNAALVEQ AAA+ Sbjct: 439 DTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQMDQVTQQNAALVEQAAAASQ 498 Query: 121 ALTERAATLTASVAVFTLTAPQAMALA 147 +L E+A L +V+VF L A QA+ +A Sbjct: 499 SLQEQAQELAQAVSVFRLEAGQALEVA 525 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.311 0.119 0.297 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 341,711 Number of extensions: 8356 Number of successful extensions: 206 Number of sequences better than 1.0e-08: 68 Number of HSP's gapped: 187 Number of HSP's successfully gapped: 69 Length of query: 165 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 87 Effective length of database: 1,250,540 Effective search space: 108796980 Effective search space used: 108796980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 127 (53.5 bits)