BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0453.p
         (297 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312539|ref|YP_003776631.1| methyltransferase [Herbaspirill...   478   e-136
gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirill...   244   5e-66

>gi|300312539|ref|YP_003776631.1| methyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 439

 Score =  478 bits (1230), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 231/293 (78%), Positives = 259/293 (88%)

Query: 4   PHCLPALYQLADLYAALGDRMQSSRYQCLAFVLPPHEGKSRELLAISFYFLGRVEEAAEV 63
           PH L AL+QLA+++A LGDRMQSSRYQC+AFVLPPHEGKSRELLAISFYFLGRV EAAEV
Sbjct: 146 PHSLAALHQLAEIHAHLGDRMQSSRYQCMAFVLPPHEGKSRELLAISFYFLGRVAEAAEV 205

Query: 64  CRQWLREEPGHPIASHMHAAYAGLPSHSVPRDYIVRRFDEYADHFDSNLVSHLDYRGPEV 123
           CR+WL+EEPGHPIA+HMHAAYAGLPSH+VPRDYIVRRFD+YADHFDSNLV+HLDYRGP+V
Sbjct: 206 CRRWLQEEPGHPIANHMHAAYAGLPSHTVPRDYIVRRFDDYADHFDSNLVTHLDYRGPQV 265

Query: 124 LGMLLNAFLSEITPSMVLDAGCGTGLCAPVLAPYALALEGVDLSPNMLRHAAQHPQYTAL 183
           L  +L A L       VLDAGCGTGLCAPVLAPYAL+LEGVDLS NMLRHAAQH +Y+ L
Sbjct: 266 LNAVLQASLPANADMRVLDAGCGTGLCAPVLAPYALSLEGVDLSSNMLRHAAQHGRYSTL 325

Query: 184 EQADVVEWMAAHPARYGLIAACDVLIYCGELASFFAAARCSLQPQGHLIFTVELAGEEHA 243
            QADVVEWM AHP+RY LIAACDVLIYCG+LASFF AA+ +LQ  GHL+FTVELAG E  
Sbjct: 326 AQADVVEWMTAHPSRYALIAACDVLIYCGQLASFFTAAQLALQEGGHLVFTVELAGAERP 385

Query: 244 APYTLHPSGRFRHQRSYVEHCLQAAGLEVLLVREESLRVEMQQAVPGLVVLAR 296
             Y LH SGRFRHQR+Y+E CL AAG++V+++REESLRVEMQQAVPGLVVLAR
Sbjct: 386 DSYYLHASGRFRHQRAYIEDCLHAAGMQVVMLREESLRVEMQQAVPGLVVLAR 438


>gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 448

 Score =  244 bits (624), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 138/298 (46%), Positives = 181/298 (60%), Gaps = 5/298 (1%)

Query: 3   DPHCLPALYQLADLYAALGDRMQSSRYQCLAFVLPPHEGKSRELLAISFYFLGRVEEAAE 62
           DP  LP+L  L  ++ A GD+MQ+S YQC A+VLPP EGKS E+L ISFYFLGR+ EAAE
Sbjct: 150 DPDFLPSLLHLGGIHEAAGDKMQASHYQCRAYVLPPLEGKSWEMLGISFYFLGRLPEAAE 209

Query: 63  VCRQWLREEPGHPIASHMHAA--YAGLPSHSVPRDYIVRRFDEYADHFDSNLVSHLDYRG 120
             R WLREEP +PIA+HM AA   A +P  +  R YI   FD YA+ F++NL+  L YRG
Sbjct: 210 AYRAWLREEPDNPIAAHMLAACSQADVPPRASDR-YIESHFDRYAETFEANLLQSLGYRG 268

Query: 121 PEVLGMLLNAFLSEITPSMVLDAGCGTGLCAPVLAPYALALEGVDLSPNMLRHAAQHPQY 180
           P ++   L            +D GCGTGLC   +APY+  L GVDL+  ML  AA    Y
Sbjct: 269 PRLIAEGLALIAPPAHQFAAIDIGCGTGLCGGQVAPYSHHLVGVDLAGKMLEKAAATGHY 328

Query: 181 TALEQADVVEWMAAHPARYGLIAACDVLIYCGELASFFAAARCSLQPQGHLIFTVELAGE 240
             LE+A++  ++A HP    L+ A D +IY G+LA    A   +L+  GH +FTVE    
Sbjct: 329 ARLEKAEIGHYLATHPQSCDLVTAADTMIYFGDLAPVMQAVALALRSGGHFVFTVEALTG 388

Query: 241 EHAAP--YTLHPSGRFRHQRSYVEHCLQAAGLEVLLVREESLRVEMQQAVPGLVVLAR 296
              AP  + LH SGR+RH R YV   LQA G  +L   ++ LR E++Q V G++ +AR
Sbjct: 389 ADVAPQGHALHASGRYRHGRDYVRGLLQAHGFTLLHDSDQILREEVRQPVAGMLFVAR 446


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 939,699
Number of extensions: 39851
Number of successful extensions: 160
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 2
Length of query: 297
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,217,395
Effective search space: 258087740
Effective search space used: 258087740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)