BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0450.p (204 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 134 6e-33 gi|300312334|ref|YP_003776426.1| transcription regulator protein... 118 3e-28 gi|300313187|ref|YP_003777279.1| transcription regulator protein... 105 2e-24 gi|300311424|ref|YP_003775516.1| LysR family transcription regul... 105 4e-24 gi|300309660|ref|YP_003773752.1| LysR family transcription regul... 101 4e-23 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 134 bits (336), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 71/201 (35%), Positives = 110/201 (54%), Gaps = 2/201 (0%) Query: 1 LRVSAAPTFARLFVIPFLPLFLARHPALEVDVILDDRTIDLVAEGIDVSLRMGNLADSAS 60 LR++A TF L + P P+FL RHP + +D+ L DR +D++ EG D+++R+ L+DS Sbjct: 94 LRINAPLTFGVLHLAPLWPMFLERHPEISLDITLSDRIVDIIDEGYDMAIRIARLSDSTL 153 Query: 61 VARKLATTRRSVLATRAYLERVPAPRVPADLARHETLVLS--QLDNVWTFTRASTAVSVM 118 V RKL +T V A+ AYL+ P P +LA+H+T+ S Q + W F VSV Sbjct: 154 VHRKLTSTSLHVCASPAYLDAHGTPAHPHELAQHQTISYSYNQSKDEWQFNGPEGPVSVR 213 Query: 119 VQGRVRFNAAEGIRAAVLADMGLAIASDWMFAPELAAGSVVRVLEKWTLPDIALWAVFPT 178 V R+ N + A L +G+ +M L +G +V +L + P++ ++AV+P+ Sbjct: 214 VSSRLHVNNGDSCVQAALGGIGITRQPTFMIDQYLRSGQLVSILGDYGAPELGIYAVYPS 273 Query: 179 GRLASAKARAFADFVEEIMLQ 199 AK RA DF+ E Q Sbjct: 274 RAHLPAKMRAMLDFLTEAFAQ 294 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 118 bits (296), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/202 (38%), Positives = 106/202 (52%), Gaps = 4/202 (1%) Query: 1 LRVSAAPTFARLFVIPFLPLFLARHPALEVDVILDDRTIDLVAEGIDVSLRMGNLADSAS 60 L +SA F R V P LP FLA H + + + L+DR D++ EGIDV++R+ L DS Sbjct: 94 LLISAPAGFGRQHVAPLLPSFLAEHRDVTLTLNLNDRIADVIGEGIDVAIRIATLTDSNL 153 Query: 61 VARKLATTRRSVLATRAYLERVPAPRVPADLARHETLVLSQLDNV--WTFTRASTAVSVM 118 V+ KLA R ++A AYL R P+ P +L RH L +S + WT R S VSV Sbjct: 154 VSVKLAENHRVIVAAPAYLRRHGTPQSPDELMRHNCLAMSSEGSQRGWTL-RQSGKVSVY 212 Query: 119 -VQGRVRFNAAEGIRAAVLADMGLAIASDWMFAPELAAGSVVRVLEKWTLPDIALWAVFP 177 V G + N E + LA GLA S W + AG +V VL+K+ P +++AVF Sbjct: 213 KVGGNMVCNDGEVLHNWALAGRGLAWRSMWEVGAAIEAGELVTVLDKFAAPAPSIYAVFA 272 Query: 178 TGRLASAKARAFADFVEEIMLQ 199 R + RAF DF+ Q Sbjct: 273 QRRHLPLRIRAFVDFLRHAYAQ 294 >gi|300313187|ref|YP_003777279.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 308 Score = 105 bits (263), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 67/207 (32%), Positives = 104/207 (50%), Gaps = 5/207 (2%) Query: 1 LRVSAAPTFARLFVIPFLPLFLARHPALEVDVILDDRTIDLVAEGIDVSLRMGNLADSAS 60 L+VS F R +++P L FL R+P ++ D ++R +DL++EG D ++ G Sbjct: 94 LKVSMGTGFGRQYIVPLLGEFLGRYPGIQPDWHFENRPVDLISEGFDAAIAGGTELSPGV 153 Query: 61 VARKLATTRRSVLATRAYLERVPAPRVPADLARHETLVL--SQLDNVWTFT---RASTAV 115 VAR+LA R +LA+ AYL+ P PADLA H +++ Q V F+ R+ Sbjct: 154 VARELAPAHRVLLASPAYLDAHPPLHSPADLAEHAGILIRSPQTGRVRPFSLRDRSGQQA 213 Query: 116 SVMVQGRVRFNAAEGIRAAVLADMGLAIASDWMFAPELAAGSVVRVLEKWTLPDIALWAV 175 V +Q R+ + A A +G+ + + P L G++VRVL W + L Sbjct: 214 PVTLQQRMTMSDANAACEVAEAGLGITLVAMPHALPYLEGGTLVRVLPDWYVDTGMLSLY 273 Query: 176 FPTGRLASAKARAFADFVEEIMLQQQI 202 F RL AK R F DFV E ++++ Sbjct: 274 FTAARLLPAKTRVFVDFVVEHFRRERL 300 >gi|300311424|ref|YP_003775516.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 105 bits (261), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 64/200 (32%), Positives = 106/200 (53%), Gaps = 6/200 (3%) Query: 1 LRVSAAPTFARLFVIPFLPLFLARHPALEVDVILDDRTIDLVAEGIDVSLRMG-NLADSA 59 LR+ A +F + +VIP + + R+P + V++ L R D++ EG DVSL + L DS Sbjct: 95 LRIHAMTSFGQRYVIPSISGYHKRYPDVAVELTLAQRIPDMLEEGYDVSLVLARELPDSG 154 Query: 60 SVARKLATTRRSVLATRAYLERVPAPRVPADLARHETLVL----SQLDNVWTFTRASTAV 115 + R+L +T + A+ AYL++ AP+ PADL H L L S LD W Sbjct: 155 LIYRQLGSTFSMLCASPAYLDKYGAPQQPADLLNHACLQLVSPISPLDE-WILEGPEGGT 213 Query: 116 SVMVQGRVRFNAAEGIRAAVLADMGLAIASDWMFAPELAAGSVVRVLEKWTLPDIALWAV 175 V V+ + N AE + A+ MG+ + + L AG++VRVL + L ++ ++A+ Sbjct: 214 VVAVKSNFQVNVAEAMLTAIREGMGIGVLPIYSAVDALRAGTIVRVLPQHRLQNMGVYAL 273 Query: 176 FPTGRLASAKARAFADFVEE 195 +P+ + AK + D++ E Sbjct: 274 YPSRQYLDAKISTWVDWMHE 293 >gi|300309660|ref|YP_003773752.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 101 bits (252), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 62/202 (30%), Positives = 97/202 (48%), Gaps = 8/202 (3%) Query: 1 LRVSAAPTFARLFVIPFLPLFLARHPALEVDVILDDRTIDLVAEGIDVSLRMGNLADSAS 60 LR+ + RL ++P L F R+P +E+ + + DR +DLV E +D +R+G L DS+ Sbjct: 94 LRIDVPASVGRLMLLPNLCDFYTRYPDIELMMGMGDRPVDLVQEAVDCVIRIGELQDSSM 153 Query: 61 VARKLATTRRSVLATRAYLERVPAPRVPADLARHETLVL------SQLDNVWTFTRASTA 114 VAR++ T + A AYLER P DL +H+ + +D W F Sbjct: 154 VARRIGTFQTVTCAAPAYLERHGVPHTIEDLQQHKAVHYFSSRTGRTID--WDFVVEGVT 211 Query: 115 VSVMVQGRVRFNAAEGIRAAVLADMGLAIASDWMFAPELAAGSVVRVLEKWTLPDIALWA 174 V + G++ N A+ L G+ A +M + G +V VL +W + + Sbjct: 212 REVKMNGKLAVNEADAYVECALQGFGMVQAPLYMVTRHIDEGRLVEVLSQWKPAPMPISV 271 Query: 175 VFPTGRLASAKARAFADFVEEI 196 V+ R S K RAF D+V E+ Sbjct: 272 VYLHNRHLSPKVRAFVDWVAEL 293 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 604,598 Number of extensions: 23590 Number of successful extensions: 215 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 183 Number of HSP's successfully gapped: 31 Length of query: 204 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 123 Effective length of database: 1,236,335 Effective search space: 152069205 Effective search space used: 152069205 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)