BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0448.p
         (582 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312542|ref|YP_003776634.1| TonB-dependent receptor protein...   986   0.0  
gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein...    67   6e-12

>gi|300312542|ref|YP_003776634.1| TonB-dependent receptor protein
           [Herbaspirillum seropedicae SmR1]
          Length = 755

 Score =  986 bits (2548), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/583 (82%), Positives = 518/583 (88%), Gaps = 2/583 (0%)

Query: 1   MPQQFEASIKAQYAQQDFSQYGASGTYRAQEYNVGLGNRRGALAWRFSVNHLDSYSQPVT 60
           MP++FEASIK QYAQQDFSQYG SGTYRAQE NVGLGNR GALAWRFSVNHLDSYS PVT
Sbjct: 174 MPERFEASIKTQYAQQDFSQYGVSGTYRAQEVNVGLGNRSGALAWRFSVNHLDSYSPPVT 233

Query: 61  YITATSLPAGTTGAVLAQDRTGKNLYVLGVGNLTHTVQDTARLKVSYDFTPALTATYTLG 120
           Y+TA + PAG+TGAV  QDR G+N+ VLG GNLTHTVQDTARLK+SYDFTP LTATYTLG
Sbjct: 234 YVTAATAPAGSTGAVATQDRLGRNIQVLGAGNLTHTVQDTARLKLSYDFTPTLTATYTLG 293

Query: 121 FWQNQASANPQSFLKTASGATAYTSGFSSNDVDQQQWMQSLELRSKTGGEWDWQLAASTL 180
           FWQNQA+A P +FL+ A GA  YTSGF+SN V+QQQWMQ LE+RS T G WDWQ+AAS +
Sbjct: 294 FWQNQANATPHTFLRNAVGAPVYTSGFNSNTVEQQQWMQGLEVRSHTDGVWDWQVAASAI 353

Query: 181 SASRDLTRTSTATFPAGQSGGAGTIADASGTGWSTVDAKGIWRPQGSAQVISFGAHVDRY 240
           S+SRDLTRTST T PAG +G AG+IADASGTGWST+DAKGIWRPQGSAQVIS GAH DRY
Sbjct: 354 SSSRDLTRTSTTTLPAGLAG-AGSIADASGTGWSTLDAKGIWRPQGSAQVISVGAHYDRY 412

Query: 241 TLATPTWNTSNWVSGGNGTLASDSRGKTETSALWAQDVWRLSSSLKATLGARYEWWRAFD 300
           TLATPTWNTSNW SG  G L +DSRGKT TSALWAQD WR S   KATLGARYEWWRAF 
Sbjct: 413 TLATPTWNTSNWSSGSAGALNADSRGKTTTSALWAQDAWRFSPGWKATLGARYEWWRAFG 472

Query: 301 GRNVSTSGSTV-FAVNQPEVSHSGLSPKASLAWALADDWVTTLSAGRALRFPTVGELYQN 359
           G N ST+GS V F V QPEVSHSGLSPKA+LAWALA+DW+ TLS GRALRFPTVGELYQN
Sbjct: 473 GFNYSTNGSGVGFPVTQPEVSHSGLSPKATLAWALAEDWLVTLSTGRALRFPTVGELYQN 532

Query: 360 VLLNGVYLQANPNLKPEKVWSTELAIEKQLQEGQGKWRVSLFEERVSDALISQSSTIGSG 419
           V +  V+LQANPNLKPEKVWSTELAIE+QL+EGQGKWRVSLFEERVSDALISQSSTIGS 
Sbjct: 533 VSVGSVFLQANPNLKPEKVWSTELAIERQLKEGQGKWRVSLFEERVSDALISQSSTIGSS 592

Query: 420 VASFTQNVDRTRQRGIEAAFERNDLLVRGFSLNGSVTWVDARILENKGYVATTAGATSVG 479
           VASFTQNVDRTRQRGIEAAFERND+LVRGFSLNGSVTWVDARILENK YV T AGA+SVG
Sbjct: 593 VASFTQNVDRTRQRGIEAAFERNDVLVRGFSLNGSVTWVDARILENKAYVPTIAGASSVG 652

Query: 480 KRTPYVPEWRATLVASYKPDDRWTYTVAGRYSGRVYATVDNTDINTHTYQGFDGYTVFDA 539
           +RTPYVPEWRATLVASY+PD+ WTYT+AGRYS RVYATVDNTDINTHTYQGFDGYTVFDA
Sbjct: 653 QRTPYVPEWRATLVASYQPDEHWTYTLAGRYSARVYATVDNTDINTHTYQGFDGYTVFDA 712

Query: 540 RVRYRIDRHWSGAVGVDNLTNRDYFLFHPFPQRTVFAELKYDF 582
           R+RYR DRHWS A+GVDNL NR YFLFHPFPQRTV AELKYDF
Sbjct: 713 RLRYRFDRHWSAALGVDNLGNRSYFLFHPFPQRTVLAELKYDF 755


>gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein
           [Herbaspirillum seropedicae SmR1]
          Length = 705

 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 133/345 (38%), Gaps = 50/345 (14%)

Query: 239 RYTLATPTWNTSNWVSGGNGTLASDSRGKTET----SALWAQDVWRLSSSLKATLGARYE 294
           RY  A P+ N  N V G     A+   G  E     + L+AQD  +    L  TLG R++
Sbjct: 388 RYRGAAPSLNIDNPVYGVTIPAATTLFGNLEENMNQTGLYAQDQIKFDQRLTLTLGGRWD 447

Query: 295 WWRAFDGRNVSTSGSTVFAVNQPEVSHSGLSPKASLAWALADDWVTTLSAGRALRFPTVG 354
                    V       F         S LS +  L++ +  D    +S   +   P  G
Sbjct: 448 --------KVKDETRNYFNRTTTRSDDSALSGRIGLSYLVTRDIAPYVSYATSF-LPQTG 498

Query: 355 ELYQNVLLNGVYLQANPNLKPEKVWSTELAIEKQLQEGQGKWRVSLFEERVSDALISQSS 414
             +     NG          P K    E+ I+ Q  +G+  +  +LFE   ++      +
Sbjct: 499 SDF-----NG------KPFDPTKARQAEVGIKYQPADGKTLFTAALFELTKTNVQTPDPA 547

Query: 415 TIGSGVASFTQNVDRTRQRGIEAAFERNDLLVRGFSLNGSVTWVDARILENKGYVATTAG 474
                V S        + RG+E   E    +V+G +L+ S T+ D +  +N         
Sbjct: 548 HTNFNVLS-----GEIKSRGLE--LEAKGEIVKGLNLSASYTYTDVKNTQNNT------- 593

Query: 475 ATSVGKRTPYVPEWRATLVASY----KPDDRWTYTVAGRYSGRVYATVDNTDINTHTYQG 530
           A+ +GK+   VP   A++ A Y     P          RY+G  YA   NT  N      
Sbjct: 594 ASLLGKQPILVPRQAASVWADYTVQGGPLAGAGIGGGARYTGSNYADAANTVKN------ 647

Query: 531 FDGYTVFDARVRYRIDRHWSGAVGVDNLTNRDYFLFHPFPQRTVF 575
             G TVFDA   Y ++R W  A+ + N+TN++Y      P  T F
Sbjct: 648 -GGVTVFDAVFHYNLNR-WRYALNISNITNKEYTSCLAEPTTTCF 690


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.128    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,947,234
Number of extensions: 85470
Number of successful extensions: 255
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 3
Length of query: 582
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 492
Effective length of database: 1,193,720
Effective search space: 587310240
Effective search space used: 587310240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)