BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0447.p
         (143 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312542|ref|YP_003776634.1| TonB-dependent receptor protein...   234   2e-63

>gi|300312542|ref|YP_003776634.1| TonB-dependent receptor protein
           [Herbaspirillum seropedicae SmR1]
          Length = 755

 Score =  234 bits (596), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 117/143 (81%), Positives = 131/143 (91%), Gaps = 2/143 (1%)

Query: 1   LLLAVLCAWSGSALAQQAAASDGSSEAATLPTIEVRSSGSVAERKQLPQTTASVTADTAA 60
           L+L+VL AWSG+ALAQQ+A    +S+AA LPTIEVR + +  +R QLPQT+ASVTADTAA
Sbjct: 11  LILSVLSAWSGAALAQQSAVE--ASDAAALPTIEVRGTVAAPQRTQLPQTSASVTADTAA 68

Query: 61  NSINVTDSSDALKYLPSLSVRKRYIGDTQSPLATRTTGVNASARSLIYADGILLSALVNN 120
           ++INVTDS+DALKYLPSLSVRKRYIGDTQSPLATRTTGVNASARSL+YADGILLSALVNN
Sbjct: 69  DTINVTDSADALKYLPSLSVRKRYIGDTQSPLATRTTGVNASARSLVYADGILLSALVNN 128

Query: 121 NNGNGSPRWFMVAPEEIERIDVM 143
           NNGNGSPRWFMVAPEEI RIDVM
Sbjct: 129 NNGNGSPRWFMVAPEEIARIDVM 151


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.123    0.334 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 326,570
Number of extensions: 10447
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,255,275
Effective search space: 82848150
Effective search space used: 82848150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 126 (53.1 bits)