BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0443.p (269 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312551|ref|YP_003776643.1| ferrisiderophore receptor prote... 395 e-111 gi|300312552|ref|YP_003776644.1| TonB-dependent outer membrane i... 357 e-100 gi|300313664|ref|YP_003777756.1| tonB-dependent receptor for iro... 149 2e-37 gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore rece... 103 2e-23 gi|300310824|ref|YP_003774916.1| hydroxamate-type ferrisideropho... 99 3e-22 >gi|300312551|ref|YP_003776643.1| ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 755 Score = 395 bits (1014), Expect = e-111, Method: Compositional matrix adjust. Identities = 189/254 (74%), Positives = 218/254 (85%), Gaps = 4/254 (1%) Query: 1 MSFIKSKKHPSSPPSPAASSCCLSAALAGVLLLPAVTAQAQSAGGKLPSVQVDAAKESPY 60 MSFIKS+KH S PA ++ S A+A LLLP + A AQ++G LP +VD A+ESPY Sbjct: 1 MSFIKSRKHAS----PAHAARLPSLAVASALLLPVMGAHAQTSGSGLPPTRVDGARESPY 56 Query: 61 KAEQSASPKYTQPLVDTPQTLQIFKRPLMEQQGATTLTELLRNTPGVGTFFLGENGSTST 120 K+E SASPKYTQPLVDTPQTLQI +RPLM QQ AT+L+++LRNTPGVG FFLGENGSTST Sbjct: 57 KSEYSASPKYTQPLVDTPQTLQILRRPLMAQQAATSLSDVLRNTPGVGAFFLGENGSTST 116 Query: 121 GDTIYMRGFDISSAIFVDNVRDLGAISRDVFNLQQVEVLKGAAGTDNGRGAPTGSVNLVT 180 GDTIYMRGFD + IFVDNVRDLGAISRDVFN++QVEVLKG AGTDNGRG+PTGS+NLVT Sbjct: 117 GDTIYMRGFDATGVIFVDNVRDLGAISRDVFNIEQVEVLKGQAGTDNGRGSPTGSINLVT 176 Query: 181 KQPELADAVSASGTYGSWNQKRATVDWNKVLNPDQGLALRLNLMKQHSGVPGRHQVHSSR 240 KQPEL DAV+ S TYGSW QKRAT+DWN++L+ D+GLALRLNLMKQHSGVPGRH VH++R Sbjct: 177 KQPELVDAVTVSATYGSWIQKRATLDWNRILDADRGLALRLNLMKQHSGVPGRHVVHNAR 236 Query: 241 DGFAPSLAWGLNGP 254 DGFAPSLA+GLN P Sbjct: 237 DGFAPSLAFGLNTP 250 >gi|300312552|ref|YP_003776644.1| TonB-dependent outer membrane iron monomeric catechols receptor protein [Herbaspirillum seropedicae SmR1] Length = 799 Score = 357 bits (917), Expect = e-100, Method: Compositional matrix adjust. Identities = 174/251 (69%), Positives = 206/251 (82%) Query: 1 MSFIKSKKHPSSPPSPAASSCCLSAALAGVLLLPAVTAQAQSAGGKLPSVQVDAAKESPY 60 M++IKS+KH S + + +S LSAA+A LLLPA+ AQAQSA LPSV+V A++E Y Sbjct: 26 MTYIKSRKHAPSTRAASLASTSLSAAVASALLLPAIGAQAQSANAALPSVEVTASQEPAY 85 Query: 61 KAEQSASPKYTQPLVDTPQTLQIFKRPLMEQQGATTLTELLRNTPGVGTFFLGENGSTST 120 KA++++S KYTQPLVDTPQTL + KR L++QQGATTLTE LRN+PGVGTF LGENG+T+T Sbjct: 86 KADKASSAKYTQPLVDTPQTLTVIKRQLIDQQGATTLTEALRNSPGVGTFSLGENGATNT 145 Query: 121 GDTIYMRGFDISSAIFVDNVRDLGAISRDVFNLQQVEVLKGAAGTDNGRGAPTGSVNLVT 180 GD IYMRGFD SSAIFVD+VRDLG++SRD+FN+QQVEVLKG AGTD GRG+PTGS+NLVT Sbjct: 146 GDAIYMRGFDSSSAIFVDSVRDLGSVSRDMFNIQQVEVLKGPAGTDTGRGSPTGSINLVT 205 Query: 181 KQPELADAVSASGTYGSWNQKRATVDWNKVLNPDQGLALRLNLMKQHSGVPGRHQVHSSR 240 KQ E DA SAS YGSWNQKR T DWNKVLN + G A+RLNLMKQ SGVPGRH+V + R Sbjct: 206 KQAETTDAFSASAMYGSWNQKRVTADWNKVLNAETGTAMRLNLMKQDSGVPGRHEVKNDR 265 Query: 241 DGFAPSLAWGL 251 G A SLA GL Sbjct: 266 TGLALSLAHGL 276 >gi|300313664|ref|YP_003777756.1| tonB-dependent receptor for iron transport protein [Herbaspirillum seropedicae SmR1] Length = 798 Score = 149 bits (377), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 94/207 (45%), Positives = 121/207 (58%), Gaps = 6/207 (2%) Query: 47 LPSVQVDAAKESP-YKAEQSASPKYTQPLVDTPQTLQIFKRPLMEQQGATTLTELLRNTP 105 L V V A +E+P YKA+ +SPK+TQPL+D PQ++ + + ++ QQ A L ++L+N P Sbjct: 61 LKEVVVTAPREAPEYKAQAVSSPKFTQPLLDLPQSITVVPKEVLTQQNAQNLQDILKNVP 120 Query: 106 GVGTFFLGENGSTSTGDTIYMRGFDISSAIFVDNVRDLGAISR-DVFNLQQVEVLKGAAG 164 G+ TF GE G+ GD +RGF ++ VD VRD G SR D FNL+QVEV KG Sbjct: 121 GI-TFTSGE-GNLGWGDMFTIRGFSSEQSLTVDGVRDAGMSSRNDTFNLEQVEVFKGTGS 178 Query: 165 TDNGRGAPTGSVNLVTKQPELADAVSASGTYGSWNQKRATVDWNKVLNPDQGLALRLNLM 224 ++G A GSVNLV+K+ L D + S GS R T D N L D ALRLNLM Sbjct: 179 IESGVSAIGGSVNLVSKEARLDDFYNTSFGVGSAGYTRFTADLNHQL--DATSALRLNLM 236 Query: 225 KQHSGVPGRHQVHSSRDGFAPSLAWGL 251 KQ + V R V R G A SL GL Sbjct: 237 KQQNHVAERDVVKYDRQGIAASLGLGL 263 >gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 738 Score = 103 bits (256), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/213 (32%), Positives = 106/213 (49%), Gaps = 6/213 (2%) Query: 42 SAGGKLPSVQVDAAKESPYKAEQSASPKYTQPLVDTPQTLQIFKRPLMEQQGATTLTELL 101 +A G+L V V ++ + + +A K L D PQ++ + + M+ QGA++L++ L Sbjct: 37 AADGQLAPVTVQGQRDD-FASTGTALTKLPADLRDVPQSVTVVNKAQMQSQGASSLSDAL 95 Query: 102 RNTPGVGTFFLGENGSTSTGDTIYMRGFDISSAIFVDNVRDLGAISRDVFNLQQVEVLKG 161 RN G+ LG G+ I + GF + I++D RD G RD F + +VEVL G Sbjct: 96 RNVSGI---TLGGAEGGQIGNNINLNGFSARTDIYLDGFRDRGQYYRDTFAIDEVEVLMG 152 Query: 162 AAGTDNGRGAPTGSVNLVTKQPELADAVSASGTYGSWNQKRATVDWNKVLNPDQGLALRL 221 + GRG+ G +N V+K+ L A SG+ + R+TVD N+ L+ ALR+ Sbjct: 153 PSSMLFGRGSTGGIINQVSKKANLKAATEISGSITTNGLVRSTVDVNRPLSDTS--ALRI 210 Query: 222 NLMKQHSGVPGRHQVHSSRDGFAPSLAWGLNGP 254 M Q+ R Q G A S WG+ P Sbjct: 211 EAMAQNGAASTRKQTDVQDFGLAGSYVWGIGTP 243 >gi|300310824|ref|YP_003774916.1| hydroxamate-type ferrisiderophore receptor signal peptide protein, tonB-dependent receptor [Herbaspirillum seropedicae SmR1] Length = 715 Score = 99.4 bits (246), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 113/209 (54%), Gaps = 9/209 (4%) Query: 47 LPSVQV--DAAKESPYKAEQSASPKYTQPLVDTPQTLQIFKRPLMEQQGATTLTELLRNT 104 LP+V V D +S +KA Q+ K + PL +TPQ++ + R +M+ Q A +L++ L+N Sbjct: 48 LPTVSVTADGYTDSKFKATQTQVNKSSTPLSETPQSISVVTRAMMDSQQAVSLSDALKNV 107 Query: 105 PGVGTFFLGENGSTSTGDTIYMRGFDISSAIFVDNVRDLGA--ISRDVFNLQQVEVLKGA 162 GV G G D + +RG S ++++D +R + ++ ++ LQQVEVLKG Sbjct: 108 SGVVAQQYGRRG----WDDLIIRGQVASDSLYLDGLRTTASSRVAEQLYGLQQVEVLKGP 163 Query: 163 AGTDNGRGAPTGSVNLVTKQPELADAVSASGTYGSWNQKRATVDWNKVLNPDQGLALRLN 222 G P G VN+V+K+P+ +D + T GS + ++TVD NK L+ + A R+N Sbjct: 164 GSLLYGLVLPGGLVNMVSKRPQGSDFANVDVTIGSHDLYQSTVDLNKSLSENGKQAFRIN 223 Query: 223 LMKQHSGVPGRHQVHSSRDGFAPSLAWGL 251 + +S H +R APSL+ L Sbjct: 224 GLISNSDDATDHVWFKNR-YIAPSLSLDL 251 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.129 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 819,662 Number of extensions: 34937 Number of successful extensions: 119 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 107 Number of HSP's successfully gapped: 14 Length of query: 269 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 185 Effective length of database: 1,222,130 Effective search space: 226094050 Effective search space used: 226094050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)