BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0442.p (453 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312551|ref|YP_003776643.1| ferrisiderophore receptor prote... 614 e-177 gi|300312552|ref|YP_003776644.1| TonB-dependent outer membrane i... 462 e-131 gi|300313664|ref|YP_003777756.1| tonB-dependent receptor for iro... 169 4e-43 gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore rece... 125 5e-30 gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore... 110 2e-25 >gi|300312551|ref|YP_003776643.1| ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 755 Score = 614 bits (1583), Expect = e-177, Method: Compositional matrix adjust. Identities = 297/453 (65%), Positives = 353/453 (77%) Query: 1 VDDYDRVNADMYTLRVQHDFSPTLKLENSTRYARTDQDYRLASFIATGSDRGKYKSGIRT 60 V+DY+RVN DM TLRV+HDFSP LKL+N+TRYARTDQDYRL+SF+A G + + T Sbjct: 303 VNDYNRVNTDMTTLRVEHDFSPDLKLQNTTRYARTDQDYRLSSFVAIGVKTDRSSVSLFT 362 Query: 61 PSATDRSTWLLARNIVTRRDQANEILSNQTHATAQFNTGAIRHTLVGGLELTRERQHALA 120 PS DRSTW ++RNI+TRRDQ+NEILSNQTH TA F +GA++HTLVGGLELTRERQHAL+ Sbjct: 363 PSPEDRSTWEVSRNIITRRDQSNEILSNQTHLTASFQSGALQHTLVGGLELTRERQHALS 422 Query: 121 FTVDGFRPPANLYQPNPRFDESEVSIRATGRNEGQIDTVALYVLDTLKFGERWSLNLGLR 180 FT RP ANLYQPNP FD+S I GRN+GQ DTV+LY LDTLKF ERWSL+LGLR Sbjct: 423 FTGPSRRPRANLYQPNPEFDDSGTLISVNGRNKGQTDTVSLYALDTLKFNERWSLSLGLR 482 Query: 181 EDHYRTSFDGIASGTATALKTSGNLLSWKLAAVFKPTSYSSVYALLASSQQPPGGNNLSL 240 ED YRTSFD L SG L + K+A VFKPTSYSS+YAL AS+QQPPGG N +L Sbjct: 483 EDFYRTSFDDTKPNAGGPLHKSGGLFNAKVAVVFKPTSYSSLYALYASAQQPPGGANFNL 542 Query: 241 SASRRNPSHPDYAPQKTRTAEIGTKWDLLDRRLAVTGALYRTDVHNEIEPGTLADTWFQI 300 SASR N SH DYAPQKT T EIGTKW+LLDR+L T ALYRT+V+NE+E +L +T+FQ Sbjct: 543 SASRSNASHTDYAPQKTDTGEIGTKWELLDRKLIATAALYRTEVNNEVELDSLTNTYFQT 602 Query: 301 GEKRTEGVELGVTGELTRDISLTAGYSRMNSRVNKGRVVTANGENYLAYAPRQSFTSWAT 360 G+K T+G+ELGVTG+L+ +SLTAGYS M S+V++G +V+A GEN+LAYAPR+SFTSW + Sbjct: 603 GKKITQGLELGVTGDLSPTVSLTAGYSHMQSQVSRGALVSATGENFLAYAPRRSFTSWVS 662 Query: 361 WRAAPGLALGGGLRYTDGLLRGTDSNALGTPTRTDAYWLVDAMASYAINKTVELQFNVTN 420 WR G LGGGLRY+ GLLRG D+NA+GTP T AYW+ D MASY I++ E+Q NV N Sbjct: 663 WRLPQGFTLGGGLRYSGGLLRGRDTNAIGTPKDTGAYWVADVMASYVIHQHAEIQLNVNN 722 Query: 421 LFNKQYAAAINKSGYRYTPGGTRAFSLTGNFRF 453 LFN Y +INKSGYRY PG R SLTGNF F Sbjct: 723 LFNNSYVRSINKSGYRYLPGDARNISLTGNFHF 755 >gi|300312552|ref|YP_003776644.1| TonB-dependent outer membrane iron monomeric catechols receptor protein [Herbaspirillum seropedicae SmR1] Length = 799 Score = 462 bits (1188), Expect = e-131, Method: Compositional matrix adjust. Identities = 238/473 (50%), Positives = 326/473 (68%), Gaps = 29/473 (6%) Query: 3 DYDRVNADMYTLRVQHDFSPTLKLENSTRYARTDQDYRLASFIATGSDRGKYKSGIRTPS 62 DY++VN D TLRV+HDFSP LKL+N+TR +T Q+Y L +F+A+ ++ + TP+ Sbjct: 334 DYNQVNTDRLTLRVEHDFSPDLKLQNTTRIGKTHQNYLLTAFMASSAN-------LLTPN 386 Query: 63 ATDRSTWLLARNIVTRRDQANEILSNQTHATAQFNTGAIRHTLVGGLELTRERQHALAFT 122 A D S+W LAR++ T ++Q N I++NQT+ TA+ +G++ HTL+GG+ELT+ERQ+ Sbjct: 387 ANDASSWTLARSLPTIKNQTNTIITNQTYLTAKLKSGSLEHTLMGGVELTQERQNNSGVL 446 Query: 123 VDGFRPPANLYQPNPRFDESE----VSIRATGRNEGQIDTVALYVLDTLKFGERWSLNLG 178 G P NLY PNP + + + G+ DTV+ Y+ DT+K ++WS N G Sbjct: 447 TSGTLPAVNLYNPNPNPNAGRGNWIMGADPSTNAWGKTDTVSAYLFDTIKVNQQWSFNGG 506 Query: 179 LREDHYRTSF----------------DGIASGTA--TALKTSGNLLSWKLAAVFKPTSYS 220 +R DHY TS G+A+GTA + TSGNLL+WKLA ++KPT YS Sbjct: 507 VRVDHYDTSLANGYRCVSSGRGTLCPTGVAAGTAFRQSFSTSGNLLNWKLAGIYKPTDYS 566 Query: 221 SVYALLASSQQPPGGNNLSLSASRRNPSHPDYAPQKTRTAEIGTKWDLLDRRLAVTGALY 280 S+YAL A+SQQPPGG++ SLSAS + +P + PQK +TAE+GTKWDLL+++LA+T ALY Sbjct: 567 SLYALYATSQQPPGGSSFSLSASNSSADNPKFDPQKAKTAELGTKWDLLNKKLALTAALY 626 Query: 281 RTDVHNEIEPGTLADTWFQIGEKRTEGVELGVTGELTRDISLTAGYSRMNSRVNKGRVVT 340 RT++ NE+E + +FQ G+K +GVELGVTGE+T D+SLTAGY+ M ++V+ G +VT Sbjct: 627 RTEITNEVEQDATSGQYFQTGKKTVQGVELGVTGEVTPDLSLTAGYTYMKTKVDSGAIVT 686 Query: 341 ANGENYLAYAPRQSFTSWATWRAAPGLALGGGLRYTDGLLRGTDSNALGTPTRTDAYWLV 400 A+GEN LAY PRQ+FTSWAT+R G LGGG RY L+RG+D+ GTP D+YW+ Sbjct: 687 ASGENTLAYTPRQAFTSWATYRLPKGFTLGGGARYVSSLVRGSDNPTSGTPKYADSYWVF 746 Query: 401 DAMASYAINKTVELQFNVTNLFNKQYAAAINKSGYRYTPGGTRAFSLTGNFRF 453 DAMA Y +NK ++LQ N+ N+FNK Y AAINKSGYRYTPG RA +LT N +F Sbjct: 747 DAMAGYVVNKNLDLQLNLYNIFNKDYVAAINKSGYRYTPGTPRAVTLTANLKF 799 >gi|300313664|ref|YP_003777756.1| tonB-dependent receptor for iron transport protein [Herbaspirillum seropedicae SmR1] Length = 798 Score = 169 bits (429), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 155/492 (31%), Positives = 228/492 (46%), Gaps = 59/492 (11%) Query: 10 DMYTLRVQHDFSPTLKLENSTRYARTDQDYRL--ASFIAT-------GSDRGKYKSGIRT 60 D T RV+HDFS +K+ N TR+ R D L A F A G+ G SG T Sbjct: 318 DALTARVEHDFSDAVKIRNQTRWERADNLSVLSPARFNAANSAGASLGTSLGYAGSGSLT 377 Query: 61 PSA-----------TDRSTWLLARNIVTRRDQANEILSNQTHATAQFNTGAIRHTLVGGL 109 ++ +R L + T + IL NQ+ + +F+TGAIRH L G+ Sbjct: 378 AASGILSYSDFTNTANRYGVLRGNDFGTSKRYT--ILDNQSDLSLKFDTGAIRHELSTGV 435 Query: 110 ELTRERQHALAFTVDGFRPPANLYQPNPRFDESEVSIRATGRN-EGQIDTVALYVLDTLK 168 +L RE L TV NP + V+ G E ++ LYV DT+K Sbjct: 436 DLYRETYGDLPRTVATPSGALGFDMSNPTVSSASVATLKGGAGLESRVTNAGLYVADTMK 495 Query: 169 FGERWSLNLGLREDHYR--TSFDGIASGTATALKTSGNLLSWKLAAVFKPTSYSSVYALL 226 F +W LR D ++ TS G AT +S LS +L V+KP +S+Y Sbjct: 496 FSPQWQFLTALRYDRWKAVTSTRG-----ATTASSSAGALSGRLGLVYKPLENASLYLTY 550 Query: 227 ASSQQPPGGNNLSLSASRRNPSHPDYAPQKTRTAEIGTKWDLLDRRLAVTGALYRTDVHN 286 A + QP + +A + S Y+P +T E+G KWD+L++RLA+TGA++RT+V + Sbjct: 551 ARAAQPSALGATTNNAIYGSASASAYSPAVAKTRELGGKWDVLNKRLALTGAVFRTEVTD 610 Query: 287 EIEPGTLADTWFQ-IGEKRTEGVELGVTGELTRDISLTAGYSRMNSRVNKGRVVTANGEN 345 E G + + + KR +GVELGV G LT S+ G +R+ S+ KG AN + Sbjct: 611 SWEYGDDETSPVRALPAKRVDGVELGVQGNLTDAWSVFGGLTRLKSKQTKG----ANAGS 666 Query: 346 YLAYAPRQSFTSWATWRAAPGLALG------GGLRYTDGLLRGTDSNALGTPT------- 392 P + W ++ A PGL G RY+D G +N+ T + Sbjct: 667 EAKNVPDWTLNLWTSYEAKPGLFFSYGAQYVGKRRYSDNKYVGGLNNSSSTVSGPSGTRP 726 Query: 393 -------RTDAYWLVDAMASYAINKTVELQFNVTNLFNKQYAAAINKS--GYRY--TPGG 441 + AYWL A + +++ + L FNV NLFNK Y + I S G++ PG Sbjct: 727 VYVLDQEKAPAYWLHSLAARWRVDRRLALNFNVDNLFNKFYWSRIGSSLDGFQLYGVPGA 786 Query: 442 TRAFSLTGNFRF 453 R ++L+ + F Sbjct: 787 GRTYTLSADISF 798 >gi|300312681|ref|YP_003776773.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 738 Score = 125 bits (315), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 138/478 (28%), Positives = 210/478 (43%), Gaps = 52/478 (10%) Query: 5 DRVNADM--YTLRVQHDFSPTLKLENSTR--YARTDQDYRLASFIATGSDRGKYKSGIRT 60 DR D+ + + V+H +P + L N T+ Y TD + I T S G + + Sbjct: 284 DRTIQDVASFNVGVKHKIAPDVTLRNQTQFNYVHTDAVETAPNTIGTVSGAG-FTQLVNA 342 Query: 61 PSATDRSTWLLARNIVTRRDQANEILSNQTHATAQFNTGAIRHTLVGGLELTRE------ 114 S S+ L R R + + NQT TA+F TG+I+H V G+E+ + Sbjct: 343 SSNLPLSS-LFVRGQSHDRVITDYSIFNQTELTAKFATGSIKHDAVVGVEVGHDGYDNQN 401 Query: 115 -----RQHALAFTVDG----FRPPANLYQPNPRFDESEVSIRATGRNEGQIDTVALYVLD 165 + A +G + L P+ S VS R G +TVA YV D Sbjct: 402 YYRNGSCNGTALNANGATTGYVDCVPLLNPSYSAAGSSVSSSTGNRAGGSANTVAAYVGD 461 Query: 166 TLKFGERWSLNLGLREDHYRTSF-DGIASG-TATALKTSGNLLSWKLAAVFKPTSYSSVY 223 T++ ++ L GLR D Y S + IAS T A + N LS + A+++PTS + Y Sbjct: 462 TVELVPQFKLVGGLRYDRYIASITNSIASARTPAAASQTINFLSLRSGAIWQPTSAQAYY 521 Query: 224 ALLASSQQPPGGNNLSLSASRRNPSHPDYAPQKTRTAEIGTKWDLLDRRLAVTGALY--- 280 +S P SL + P+K R+ E+G KWDL D LA+T A + Sbjct: 522 VSYGTSFNP------SLEQLTGTQGQQNLDPEKNRSYELGGKWDLAD-GLALTAAAFQIT 574 Query: 281 RTDVHNEIEPGTLADTWFQIGEKRTEGVELGVTGELTRDISLTAGYSRMNSRVNKGRVVT 340 + + +++ G A G+ R G G TG +TR+ + A Y+ + ++V +G Sbjct: 575 KDNARSQVATGVYA----LAGKVRVNGARAGATGHITREWQVAANYTYLGAKVLEG---- 626 Query: 341 ANGENYLAYA----PRQSFTSWATWRAAPGLALGGGLRYTDGLLRGTDSNALGTPTRTDA 396 A G+N + P+ + T+W T+ AP +GGG Y R D+ + Sbjct: 627 AAGDNSVGKVPVNTPKHTLTTWTTYDLAPHWQIGGGASYMS--QRYADAP---NTVQVGG 681 Query: 397 YWLVDAMASYAINKTVELQFNVTNLFNKQ-YAAAINKSGYRYTPGGTRAFSLTGNFRF 453 Y DAM +Y K +++ N+ NL NK Y A I G R PG R L+ +R Sbjct: 682 YTRYDAMLAYT-TKAYDIRLNLYNLSNKMYYDALIQSDGGRSVPGSGRTALLSLTYRM 738 >gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 704 Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 107/370 (28%), Positives = 176/370 (47%), Gaps = 26/370 (7%) Query: 88 NQTHATAQFNTGAIRHTLVGGLEL-TRERQHALAFTVDGFRPPANLYQPN-PRFDESEVS 145 NQ+ T + G+IRH ++ GLEL ++ + + A V F P +++ P P D + Sbjct: 347 NQSELTQKLQLGSIRHEILYGLELGSQSKDASQASGVVNF-PGVSIFNPVLPVVDPNR-- 403 Query: 146 IRATGRNEGQIDTVALYVLDTLKFGERWSLNLGLREDHYR--TSFDGIASGTATALKTSG 203 + G DT A Y+ D+L E+W +GLR D YR + +A+G+ L+ + Sbjct: 404 LNPPTLTYGTYDTFATYLQDSLSLSEQWKALVGLRYDRYRQQSRILNLANGSTADLQRTD 463 Query: 204 NLLSWKLAAVFKPTSYSSVYALLASSQQPPGGNNLSLSASRRNPSHPDYAPQKTRTAEIG 263 +S + V++P+ S Y + S Q P G + +L+ ++ D AP++TR E G Sbjct: 464 TAVSPRAGLVWQPSLTQSYYLSWSRSFQ-PSGESFALAT-----NNADLAPEQTRNTEAG 517 Query: 264 TKWDLLDRRLAVTGALYRTDVHNEIEPGTLADTWFQIGEKRTEGVELGVTGELTRDISLT 323 K+D + R + T +++R + N I+ +G++RT+G EL + +L + L Sbjct: 518 AKYDFWEGRASATVSVFRLERDN-IKSALPNGVVIPVGKQRTDGAELSFSADLKQGWKLL 576 Query: 324 AGYSRMNSRVNKGRV----VTANGENYLAYAPRQSFTSWATWRAAPGLALGGGLRYTDGL 379 AGY+ +N+ + + V G+N PR S W T R + GG G Sbjct: 577 AGYAWLNAVITESSSFDNGVPFKGKN-ATLTPRHSGNLWLT-RELGEGLVVGGGANAVGA 634 Query: 380 LRGTDSNALGTPTRTDAYWLVDAMASYAINKTVELQFNVTNLFNKQYAAAINKSGYRYT- 438 N + P Y VDAMA+Y +K E+Q N+ NLFN Y + + + + Sbjct: 635 RFANPGNTVTLP----GYVTVDAMAAYRTSK-YEVQLNIGNLFNTGYIISGHGTNPNLSM 689 Query: 439 PGGTRAFSLT 448 PG R +LT Sbjct: 690 PGAPRNVALT 699 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.131 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,392,498 Number of extensions: 55538 Number of successful extensions: 202 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 178 Number of HSP's successfully gapped: 17 Length of query: 453 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 365 Effective length of database: 1,203,190 Effective search space: 439164350 Effective search space used: 439164350 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)