BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0437.p (459 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 357 e-100 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 291 1e-79 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 193 2e-50 gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis pro... 177 1e-45 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 162 5e-41 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 357 bits (917), Expect = e-100, Method: Compositional matrix adjust. Identities = 192/359 (53%), Positives = 264/359 (73%), Gaps = 2/359 (0%) Query: 24 VXISVRLAVCFAVLIGVMCVITGIALKSLNRVEKSTAEIVEDRYQKIALASDISDNVNGA 83 + ISVRLAVCFAVLIGVMC+ITG+ +KSL+ + KS+A IVEDRY+KIALA +I DNVNGA Sbjct: 6 IKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRDNVNGA 65 Query: 84 VRSLRDALLGRTPEESAKYTEQGQSFSAKTGKALAQIEKLLTSPRDKDMLKMVMDARNAY 143 R+LR+ALLGR EE+ +Y ++ + SAKT +AL ++EK+L++ R +++ + + +AR+AY Sbjct: 66 ARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQEARSAY 125 Query: 144 TPSRDKLRELIKQNKKEEGTELLFKEVVPVQDKYLKALDDFVAYQKTMMDESVLQGKQTA 203 RDKLRELIKQ KKEE ELLF +V+P QDKY + LD FVA+QK++M++SV +G+ T Sbjct: 126 NTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVTEGRDTT 185 Query: 204 SSATSLMLLLSGAAILICVAAAWLVTRSITGPLNQAVSIAGAVAQGDLTVRIEATTKDET 263 SA ++ML LS AI +CV AAWLVTRSIT PLN+AVS+A AVA GDLTV+I AT+KDET Sbjct: 186 QSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIGATSKDET 245 Query: 264 GTLLASLKSMNENLHRIVTQVRQGTDAITTASKEIASGNLDLSSRT--XVASVKRVTDVV 321 G LLA+LKSMN++LHRIV++VRQG+D I TAS EIA+GNLDLSSRT +++ + Sbjct: 246 GALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEETASAM 305 Query: 322 GEISAASSEQSAGIEQINRAIAQMDEVTQQNAALVEEAAAAAQSLQEQSHRLSETVSIF 380 E+++ + + Q N A EV Q ++V + + + S ++ + +S+ Sbjct: 306 EELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDIISVI 364 Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 87/157 (55%), Positives = 100/157 (63%), Gaps = 9/157 (5%) Query: 311 VASVKRVTDVVGEISAASSEQSAGIEQINRAIAQMDEVTQQNAALVEEAAAAAQSLQEQS 370 VASV+RVTDVV EISAAS+EQS GIEQIN AI QMD+VTQQNAALVEEAAAAAQSLQEQS Sbjct: 442 VASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQVTQQNAALVEEAAAAAQSLQEQS 501 Query: 371 HRLSETVSIFRLDSQH--------AAMGSATAYAKPVRQPVASKPAAPKPAAQKPAATPP 422 RLS TVS+F+L S + A V + P+ P A+ Sbjct: 502 TRLSATVSVFKLSSHDTPHAAAPRKPAPAQAASRPAAAATVRTAPSKPAAVLASSASPAS 561 Query: 423 APAVAVPALPAKTAANAAIAKASSKAPPAGEGDWEQF 459 + ALP+K AA A+ AKA SKA A +GDWEQF Sbjct: 562 PASTTPKALPSKPAAPAS-AKAGSKAMAADDGDWEQF 597 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 291 bits (744), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 159/357 (44%), Positives = 233/357 (65%), Gaps = 2/357 (0%) Query: 26 ISVRLAVCFAVLIGVMCVITGIALKSLNRVEKSTAEIVEDRYQKIALASDISDNVNGAVR 85 ISVRL CFA LI VMCVI G+ +K+L V +T EIV DRY K+AL + I+D VN R Sbjct: 9 ISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKVNTGAR 68 Query: 86 SLRDALLGRTPEESAKYTEQGQSFSAKTGKALAQIEKLLTSPRDKDMLKMVMDARNAYTP 145 SLR+A++ R PEE KY ++ +++++ + LA++EK +PR ++L + AR Y+ Sbjct: 69 SLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQARADYSK 128 Query: 146 SRDKLRELIKQNKKEEGTELLFKEVVPVQDKYLKALDDFVAYQKTMMDESVLQGKQTASS 205 R K+ +LI Q K++E T LF + +PVQDKY A+ + V++Q ++MD+S + +SS Sbjct: 129 ERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAERASAASSS 188 Query: 206 ATSLMLLLSGAAILICVAAAWLVTRSITGPLNQAVSIAGAVAQGDLTVRIEATTKDETGT 265 A ++ML+LSG A+L+ A L+TRSIT PLN+AV +A AVA GDLTV+IEAT+KDETG Sbjct: 189 AINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEATSKDETGA 248 Query: 266 LLASLKSMNENLHRIVTQVRQGTDAITTASKEIASGNLDLSSRT--XVASVKRVTDVVGE 323 LL +LKSMN+NLHRIV +VR GTD I TAS+EIA+GNLDLSSRT +++ + E Sbjct: 249 LLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEETASAMEE 308 Query: 324 ISAASSEQSAGIEQINRAIAQMDEVTQQNAALVEEAAAAAQSLQEQSHRLSETVSIF 380 +++ + + Q N +V Q ++V E + + S ++ + +S+ Sbjct: 309 LTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDIISVI 365 Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/149 (57%), Positives = 98/149 (65%), Gaps = 15/149 (10%) Query: 311 VASVKRVTDVVGEISAASSEQSAGIEQINRAIAQMDEVTQQNAALVEEAAAAAQSLQEQS 370 VASVKRVTDVV EI+AAS EQS GIEQIN+AI QMDEVTQQNAALVE+AAAAAQSLQEQS Sbjct: 443 VASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQQNAALVEQAAAAAQSLQEQS 502 Query: 371 HRLSETVSIFRLDSQHAAMGSATAYAKPVRQPVASKPAAPKPAAQKPAATPPAPAVAVPA 430 RLS+TV IFRL + HA S + PV++ V PA P A+KP APA ++PA Sbjct: 503 GRLSDTVGIFRLGNDHAHQPS--PLSAPVQRSVQVAPARP-VLARKPVTRTSAPAKSIPA 559 Query: 431 LPAKTAANAAIAKASSKAPPAGEGDWEQF 459 A A +G WEQF Sbjct: 560 AQPVAQAALA------------DGQWEQF 576 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 193 bits (491), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 119/360 (33%), Positives = 203/360 (56%), Gaps = 4/360 (1%) Query: 24 VXISVRLAVCFAVLIGVMCVITGIALKSLNRVEKSTAEIVEDRYQKIALASDISDNVNGA 83 + I+ RLA+ F++LI V+ I + L L + K+ +V DRY+KIA+ + IS V+ Sbjct: 6 LSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISGKVDDV 65 Query: 84 VRSLRDALLGRTPEESAKYTEQGQSFSAKTGKALAQIEKLLTSPRDKDMLKMVMDARNAY 143 SLR+ LL P + A + +S SA+ K ++ +L+ +P K L V + R +Y Sbjct: 66 AISLRNQLLMTDPAQIAAEQKTIESLSAENTKLYDELTRLVANPEAKAKLDKVTETRKSY 125 Query: 144 TPSRDKLRELIKQNKKEEGTELLFKEVVPVQDKYLKALDDFVAYQKTMMDESVLQGKQTA 203 R ++ +L K+ +L+ E+VP+Q Y LD+ Q+ +MD+SV Q + A Sbjct: 126 AALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQSVDQA-EAA 184 Query: 204 SSATSLMLLLSGA-AILICVAAAWLVTRSITGPLNQAVSIAGAVAQGDLTVRIEATTKDE 262 T ++++++G A AW ++RSIT PL++AV +A VA GDLT I A + DE Sbjct: 185 YETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIAAHSNDE 244 Query: 263 TGTLLASLKSMNENLHRIVTQVRQGTDAITTASKEIASGNLDLSSRT--XVASVKRVTDV 320 TG LL +L +MN+ L IV +VR+GTD++ TAS +IA+GNLDLSSRT ++++ Sbjct: 245 TGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEETASS 304 Query: 321 VGEISAASSEQSAGIEQINRAIAQMDEVTQQNAALVEEAAAAAQSLQEQSHRLSETVSIF 380 + E++++ + + + + A +V Q V++ ++ + SH++ + +S+ Sbjct: 305 LEELTSSVKQNADHTRKSSELAANASQVANQGGLAVKQVVQTMGAINDSSHKIVDIISVI 364 Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 72/158 (45%), Positives = 93/158 (58%), Gaps = 22/158 (13%) Query: 271 KSMNENLHRIVTQVRQGTDAITTASKEIASGNLDLSSRTXVASVKRVTDVVGEISAASSE 330 K + E ++ V QV GT+ + A + + V S+++V+ +VGEISAA+ E Sbjct: 411 KEIKELINDSVNQVTSGTELVAQAGSTMDA---------VVNSIEQVSHIVGEISAATRE 461 Query: 331 QSAGIEQINRAIAQMDEVTQQNAALVEEAAAAAQSLQEQSHRLSETVSIFRLDSQHAAMG 390 QS GIEQ+N+AI QMD TQQNAALVEEAAAAAQ+LQ+Q+ RL + V +FRLD G Sbjct: 462 QSDGIEQVNQAIMQMDNTTQQNAALVEEAAAAAQALQDQAQRLLDLVGVFRLDE---VGG 518 Query: 391 SATAYAKPVRQPVASKPAAP---KPAAQKPAATPPAPA 425 S A P A P AP K +A P AT PA Sbjct: 519 SGPA-------PSAVAPVAPVLRKVSAAAPRATKSLPA 549 >gi|300309376|ref|YP_003773468.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 534 Score = 177 bits (450), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 127/355 (35%), Positives = 193/355 (54%), Gaps = 21/355 (5%) Query: 24 VXISVRLAVCFAVLIGVMCVITGIALKSLNRVEKSTAEIVEDRYQKIALASDISDNVNGA 83 V I VRL + F +L+ +M + + L ++ +++ D+Y K +A DI D +N Sbjct: 6 VTIRVRLWLGFGLLMVLMLAMAASGIARLGQLNAQMKDVIHDKYPKTVVAGDIVDQLNLI 65 Query: 84 VRSLRDALL-GRTPEESAKYTEQGQSFSAKTGKALAQIEKLLTSPRDKDMLKMVMDARNA 142 RS+R+ LL R P+ ++Y E+ + LAQ++KLLT + L ++ A+NA Sbjct: 66 ARSVRNILLLKREPQIKSEY-ERISGADRAIREDLAQLDKLLTDGDSRAALTTLVTAQNA 124 Query: 143 YTPSRDKLRELIKQNKKEEGTELLFKEVVPVQDKYLKALDDFVAYQKTMMDESVLQGKQT 202 Y RDK+ +++Q KE ++L EV PVQ + A D + Q MM + + + Sbjct: 125 YFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMNAADALIRQQHEMMKTAGDEVESN 184 Query: 203 ASSATSLMLLLSGAAILICVAAAWLVTRSITGPLNQAVSIAGAVAQGDLTVRIEATTKDE 262 + A +L+LLL+ A + AW++TRSIT PL++AV +A VA GDLT I+A +DE Sbjct: 185 YAQARTLLLLLAAAGLAAAAVIAWMITRSITAPLDRAVRVAETVAAGDLTSAIDAHGRDE 244 Query: 263 TGTLLASLKSMNENLHRIVTQVRQGTDAITTASKEIASGNLDLSSRTXVASVKRVTDVVG 322 T LL +LK MN+ L IV+QVR TD I TAS EIA GNLDLSSRT Sbjct: 245 TSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRT------------- 291 Query: 323 EISAASSEQSAGIEQINRAIAQMDEVTQQNAALVEEAAAAAQSLQEQSHRLSETV 377 EQ+A +E+ ++ Q+ +QNA+ +A+ A S + + + E V Sbjct: 292 ------EEQAASLEETASSMEQLTATVKQNASHAGQASQLAGSASDIARQGGEVV 340 Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 56/101 (55%), Positives = 74/101 (73%), Gaps = 12/101 (11%) Query: 311 VASVKRVTDVVGEISAASSEQSAGIEQINRAIAQMDEVTQQNAALVEEAAAAAQSLQEQS 370 V SV+RV +VV EIS+A EQSAGIEQ+N AI QMD+VTQQNAALVE+AAAAAQ+LQ+Q+ Sbjct: 442 VQSVQRVGEVVNEISSAGQEQSAGIEQVNLAIVQMDQVTQQNAALVEQAAAAAQALQDQA 501 Query: 371 HRLSETVSIFRLDSQHAAMGSATAYAKPVRQPVASKPAAPK 411 +L+ VSIF+L+ A ++P R + PA+P+ Sbjct: 502 AQLARMVSIFKLED---------AASEPRR---VAAPASPR 530 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 162 bits (410), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 112/363 (30%), Positives = 196/363 (53%), Gaps = 14/363 (3%) Query: 26 ISVRLAVCFAVLIGVMCVITGIALKSLNRVEKSTAEIVEDRYQKIALASDISDNV--NGA 83 I VRLA+ F L+ +M V+ + + L + +T D +IAL + D V + A Sbjct: 6 IGVRLAIGFIALLMLMAVMVALGVWRLGSIGDAT-----DDMTRIALKKE-RDAVQWHAA 59 Query: 84 VR--SLRDALLGRTPEES--AKYTEQGQSFSAKTGKALAQIEKLLTSPRDKDMLKMVMDA 139 ++ +R + ++ +++ A + +Q + SA+ + ++E +T +K + V Sbjct: 60 IKENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKL 119 Query: 140 RNAYTPSRDKLRELIKQNKKEEGTELLFKEVVPVQDKYLKALDDFVAYQKTMMDESVLQG 199 R AY +R + ++ E+ +V + D Y + + +QK ++D++ Sbjct: 120 RAAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAI 179 Query: 200 KQTASSATSLMLLLSGAAILICVAAAWLVTRSITGPLNQAVSIAGAVAQGDLTVRIEATT 259 + S S++L L I++ A AWL+TRSIT PLNQAV+IA VA GDLT RI++++ Sbjct: 180 NRDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSS 239 Query: 260 KDETGTLLASLKSMNENLHRIVTQVRQGTDAITTASKEIASGNLDLSSRT--XVASVKRV 317 +DETG LLA+LK+MN NL IV +VR GT+ I TAS+EIA+GNLDLS+RT S++ Sbjct: 240 RDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEET 299 Query: 318 TDVVGEISAASSEQSAGIEQINRAIAQMDEVTQQNAALVEEAAAAAQSLQEQSHRLSETV 377 + ++++ + + Q N A +V Q A+V++ A ++ S ++++ + Sbjct: 300 ASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADII 359 Query: 378 SIF 380 + Sbjct: 360 GVI 362 Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/73 (64%), Positives = 59/73 (80%) Query: 311 VASVKRVTDVVGEISAASSEQSAGIEQINRAIAQMDEVTQQNAALVEEAAAAAQSLQEQS 370 V SV RVT VV EI+ AS EQS GIEQ+N AI +DE TQQNAALVE+AAAAA+S+Q+Q+ Sbjct: 440 VQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQNAALVEQAAAAARSMQDQA 499 Query: 371 HRLSETVSIFRLD 383 L++ VS+FRL+ Sbjct: 500 ASLTDAVSVFRLE 512 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.125 0.332 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 946,870 Number of extensions: 30045 Number of successful extensions: 345 Number of sequences better than 1.0e-08: 63 Number of HSP's gapped: 289 Number of HSP's successfully gapped: 123 Length of query: 459 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 371 Effective length of database: 1,203,190 Effective search space: 446383490 Effective search space used: 446383490 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)