BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0434.p (381 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 410 e-115 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 312 2e-86 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 194 1e-50 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 169 4e-43 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 168 6e-43 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 410 bits (1053), Expect = e-115, Method: Compositional matrix adjust. Identities = 211/290 (72%), Positives = 254/290 (87%) Query: 1 MNIKNIKISARLAACFGILVAVMCLIAGVGMQSLHSISKASRIVVEDRYVKIALVMEIRE 60 M +K+IKIS RLA CF +L+ VMCLI GVGM+SL SISK+S ++VEDRY KIAL +EIR+ Sbjct: 1 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD 60 Query: 61 NVNSAARNLRNAMLGRNPDEAKRYLDRGAANSAKTTESMNQIEKLISTPRGKELFKAIQD 120 NVN AARNLRNA+LGRN +EA RYLDR AANSAKTTE++ ++EK++ST RG+ELF++IQ+ Sbjct: 61 NVNGAARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQE 120 Query: 121 ARATYSTSRDKLRELILQQKKEEATEVLFNEVIPKQDRYFDVLNDFVAFQRTLMDESVAE 180 AR+ Y+T RDKLRELI QQKKEEA E+LF +VIP QD+YF VL+ FVAFQ++LM++SV E Sbjct: 121 ARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVTE 180 Query: 181 GQQTSDSAIALMLELSAVAILLCVLAAWWVTRSITRPLNEAVDVASAVAQGDLTVQIGET 240 G+ T+ SAIA+ML LSAVAI LCV+AAW VTRSITRPLNEAV VASAVA GDLTVQIG T Sbjct: 181 GRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIGAT 240 Query: 241 TRDETGKLLASLKAMNQNLHRIVSEVRTGSDTINTASSEIASGNLDLSSR 290 ++DETG LLA+LK+MN +LHRIVSEVR GSDTINTAS+EIA+GNLDLSSR Sbjct: 241 SKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSR 290 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 312 bits (800), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 165/290 (56%), Positives = 217/290 (74%) Query: 1 MNIKNIKISARLAACFGILVAVMCLIAGVGMQSLHSISKASRIVVEDRYVKIALVMEIRE 60 M I ++KIS RL ACF L+ VMC+IAGVG+++L +S A+ +V DRYVK+AL +I + Sbjct: 2 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 61 Query: 61 NVNSAARNLRNAMLGRNPDEAKRYLDRGAANSAKTTESMNQIEKLISTPRGKELFKAIQD 120 VN+ AR+LRNA++ RNP+E K+YLDR +++ +E + ++EK +TPRG EL A++ Sbjct: 62 KVNTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQ 121 Query: 121 ARATYSTSRDKLRELILQQKKEEATEVLFNEVIPKQDRYFDVLNDFVAFQRTLMDESVAE 180 ARA YS R K+ +LI QQK++EAT LF++ IP QD+YF + + V+FQ +LMD+S Sbjct: 122 ARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAER 181 Query: 181 GQQTSDSAIALMLELSAVAILLCVLAAWWVTRSITRPLNEAVDVASAVAQGDLTVQIGET 240 S SAI +ML LS VA+LL L A +TRSITRPLNEAV VA+AVA GDLTVQI T Sbjct: 182 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEAT 241 Query: 241 TRDETGKLLASLKAMNQNLHRIVSEVRTGSDTINTASSEIASGNLDLSSR 290 ++DETG LL +LK+MN NLHRIV+EVR G+DTINTAS EIA+GNLDLSSR Sbjct: 242 SKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSR 291 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 194 bits (492), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 110/290 (37%), Positives = 172/290 (59%) Query: 1 MNIKNIKISARLAACFGILVAVMCLIAGVGMQSLHSISKASRIVVEDRYVKIALVMEIRE 60 M N+ I+ RLA F IL+ V+ I +G+ L I+KA +VV DRY KIA++ I Sbjct: 1 MRFNNLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISG 60 Query: 61 NVNSAARNLRNAMLGRNPDEAKRYLDRGAANSAKTTESMNQIEKLISTPRGKELFKAIQD 120 V+ A +LRN +L +P + + SA+ T+ +++ +L++ P K + + Sbjct: 61 KVDDVAISLRNQLLMTDPAQIAAEQKTIESLSAENTKLYDELTRLVANPEAKAKLDKVTE 120 Query: 121 ARATYSTSRDKLRELILQQKKEEATEVLFNEVIPKQDRYFDVLNDFVAFQRTLMDESVAE 180 R +Y+ R ++ +L K+ A +++ +E++P Q YF L++ Q+ LMD+SV + Sbjct: 121 TRKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQSVDQ 180 Query: 181 GQQTSDSAIALMLELSAVAILLCVLAAWWVTRSITRPLNEAVDVASAVAQGDLTVQIGET 240 + ++ +M+ +A AW ++RSITRPL+ AV+VA VA GDLT I Sbjct: 181 AEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIAAH 240 Query: 241 TRDETGKLLASLKAMNQNLHRIVSEVRTGSDTINTASSEIASGNLDLSSR 290 + DETG+LL +L AMNQ L IV EVR G+D++ TAS++IA+GNLDLSSR Sbjct: 241 SNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSR 290 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 169 bits (428), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 112/291 (38%), Positives = 169/291 (58%), Gaps = 1/291 (0%) Query: 1 MNI-KNIKISARLAACFGILVAVMCLIAGVGMQSLHSISKASRIVVEDRYVKIALVMEIR 59 MNI N+ I RL F +++ +IAG+G+ L +++A+R ++ + L+ + Sbjct: 1 MNIIGNMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWY 60 Query: 60 ENVNSAARNLRNAMLGRNPDEAKRYLDRGAANSAKTTESMNQIEKLISTPRGKELFKAIQ 119 N+ + R +P + AA+S + E Q+E L+STP K LF+ I Sbjct: 61 TNLVAGIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIG 120 Query: 120 DARATYSTSRDKLRELILQQKKEEATEVLFNEVIPKQDRYFDVLNDFVAFQRTLMDESVA 179 + R Y +SRD++ + EEA +L +P Y D + V FQR MD++ Sbjct: 121 ELRKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAR 180 Query: 180 EGQQTSDSAIALMLELSAVAILLCVLAAWWVTRSITRPLNEAVDVASAVAQGDLTVQIGE 239 E + + L+L L + +LL ++ A ++T IT+PL+ AVDV+ VA+GDL+ +I Sbjct: 181 EIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEIAV 240 Query: 240 TTRDETGKLLASLKAMNQNLHRIVSEVRTGSDTINTASSEIASGNLDLSSR 290 T+RDETG+LL SLK MNQ+L IVS VR+G+DTI+TASSEIA+GNLDLSSR Sbjct: 241 TSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSR 291 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 168 bits (426), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 111/294 (37%), Positives = 165/294 (56%), Gaps = 12/294 (4%) Query: 3 IKNIKISARLAACFGILVAVMCLIAGVGMQSLHSISKASRIVVEDRYVKIALVMEIRENV 62 +KN+KI RLA F L+ +M ++ +G+ L SI A+ D +IAL E R+ V Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDAT-----DDMTRIALKKE-RDAV 54 Query: 63 NSAARNLRN-----AMLGRNPDEAKRYLDRGA-ANSAKTTESMNQIEKLISTPRGKELFK 116 A N A++ + D + Y + A SA+ ++ ++E I+ K LF Sbjct: 55 QWHAAIKENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFD 114 Query: 117 AIQDARATYSTSRDKLRELILQQKKEEATEVLFNEVIPKQDRYFDVLNDFVAFQRTLMDE 176 + RA Y +R + ++ A E+ ++ D Y D + + FQ+ ++D+ Sbjct: 115 EVGKLRAAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQ 174 Query: 177 SVAEGQQTSDSAIALMLELSAVAILLCVLAAWWVTRSITRPLNEAVDVASAVAQGDLTVQ 236 + A + S +++L L A+ I+L AW +TRSITRPLN+AV +A VA GDLT + Sbjct: 175 TAAAINRDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSR 234 Query: 237 IGETTRDETGKLLASLKAMNQNLHRIVSEVRTGSDTINTASSEIASGNLDLSSR 290 I ++RDETGKLLA+LK MN NL IV VR G++TINTAS EIA+GNLDLS+R Sbjct: 235 IDSSSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSAR 288 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.130 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 931,329 Number of extensions: 32339 Number of successful extensions: 305 Number of sequences better than 1.0e-08: 57 Number of HSP's gapped: 258 Number of HSP's successfully gapped: 57 Length of query: 381 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 294 Effective length of database: 1,207,925 Effective search space: 355129950 Effective search space used: 355129950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)