BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0428.p (314 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312554|ref|YP_003776646.1| transcription regulator protein... 611 e-176 gi|300313281|ref|YP_003777373.1| LysR family transcription regul... 140 1e-34 gi|300310448|ref|YP_003774540.1| transcription regulator protein... 127 2e-30 gi|300310675|ref|YP_003774767.1| LysR family transcription regul... 107 1e-24 gi|300314079|ref|YP_003778171.1| LysR family transcription regul... 106 2e-24 >gi|300312554|ref|YP_003776646.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 611 bits (1576), Expect = e-176, Method: Compositional matrix adjust. Identities = 294/313 (93%), Positives = 303/313 (96%) Query: 1 MSRLPDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 60 MSRLPDHLD+HLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR Sbjct: 1 MSRLPDHLDLHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGAR 60 Query: 61 GMVPTQHGESLLKPAKRILDETERLFVPKTAFVPQEEERTFHIAAPDYMNTPFFTEVIAR 120 GMVPTQHGESLLKPAKRILDETERLF+PKT FVPQEEER FHIAAPDYMNTPFFTEVIAR Sbjct: 61 GMVPTQHGESLLKPAKRILDETERLFIPKTEFVPQEEERIFHIAAPDYMNTPFFTEVIAR 120 Query: 121 LRRESPRSRIVIHALGPDTDYVRLLSDGELDLVIANWDEPPAHLHLSKLFDDPIVCLMRA 180 LRRESPRSRIVIHALGPDTDYVR LSDGELDLVIANWD PPAHLHLSKLFDDPIVCLMRA Sbjct: 121 LRRESPRSRIVIHALGPDTDYVRRLSDGELDLVIANWDAPPAHLHLSKLFDDPIVCLMRA 180 Query: 181 DCAYAKRTARDAMSIEDYLSLPHAAPSQILPGYHGTIDTFLEKQNLHRNVVVESAHFRML 240 DCAYA+RTAR+AMS+EDYLSLPHAAPSQILPGYHG+ID+FLEKQNL RNVVVESAHFRML Sbjct: 181 DCAYARRTAREAMSVEDYLSLPHAAPSQILPGYHGSIDSFLEKQNLRRNVVVESAHFRML 240 Query: 241 PYMVAQTDLVLTAGQQFASFYEKLLGLKSYTVPIKFPPLRFYQLWHERVHQATEHKWLRA 300 PYMVAQTDLVLTAGQQFASFYEKLL LKSY VPIKFPPLRFYQLWHER HQATEHKWLRA Sbjct: 241 PYMVAQTDLVLTAGQQFASFYEKLLSLKSYAVPIKFPPLRFYQLWHERSHQATEHKWLRA 300 Query: 301 QVSAAAKMMAQGR 313 QV AAAK++AQ R Sbjct: 301 QVGAAAKLLAQPR 313 >gi|300313281|ref|YP_003777373.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 323 Score = 140 bits (353), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 91/303 (30%), Positives = 144/303 (47%), Gaps = 15/303 (4%) Query: 7 HLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGARGMVPTQ 66 + D++L+ I + E++VS A KL+ QP++S +L KLR GDPL V+ RGM PT Sbjct: 3 NFDLNLLPIALAVFEERSVSAAARKLDMSQPAVSVALNKLRSALGDPLFVKTGRGMQPTP 62 Query: 67 HGESLLKPAKRILDETERLFVPKTAFVPQEEERTFHIAAPDYMNTPFFTEVIARLRRESP 126 SL+ P + IL + F P + F +A D ++ R+R E+P Sbjct: 63 RAVSLIGPTREILQRVHAEVLSSDQFTPATTTKRFVLALSDIGELMLLPRLLERIRDEAP 122 Query: 127 RSRIVIHALGPDTDYVRLLSDGELDLVIANW-DEPPAHLHLSKLFDDPIVCLMRADCAYA 185 + +V + P + V L GE+DL I + D + +LF VCL+RA Sbjct: 123 HASVVTVTMAP-AELVAALESGEVDLAIGYFPDLRNRNFFQQRLFSQDFVCLLRAGHPLP 181 Query: 186 KRTARDAMSIEDYLSLPHAAPSQILPGYHG----TIDTFLEKQNLHRNVVVESAHFRMLP 241 + +S+E Y + H I+ G + FL ++ + R VV+ +AHF +P Sbjct: 182 AQK----ISLEHYQAAGH-----IVVKAEGRDQPMCERFLLRRKIRRRVVLSTAHFMAIP 232 Query: 242 YMVAQTDLVLTAGQQFASFYEKLLGLKSYTVPIKFPPLRFYQLWHERVHQATEHKWLRAQ 301 +VA +DLV T + F F + G++ + P L Q WH + H+ + WLR Sbjct: 233 LLVATSDLVATVPRAFGEFVVRFAGIRLVEPGFEMPMLDLKQHWHRKYHKDAGNAWLRGL 292 Query: 302 VSA 304 +A Sbjct: 293 AAA 295 >gi|300310448|ref|YP_003774540.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 90/300 (30%), Positives = 138/300 (46%), Gaps = 5/300 (1%) Query: 5 PDHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGARGMVP 64 P +D++L+ + + E+ +S VA +L QP++S +L +LR D L VR A+GM P Sbjct: 6 PRDIDLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFEDELFVRTAQGMQP 65 Query: 65 TQHGESLLKPAKRILDETERLFVPKTAFVPQEEERTFHIAAPDYMNTPFFTEVIARLRRE 124 T E L +P L + R + F PQ R F IA D F +I R Sbjct: 66 TPFAEQLAEPVAAALQQVARALNLQEGFAPQTSARRFTIAMTDVGEVYFMPALIEACARC 125 Query: 125 SPRSRIVIHALGPDTDYVRLLSDGELDLVIANWDEPPAHLHLSKLFDDPIVCLMRADCAY 184 +P I G D + G +DL I +D L+ +LF V + R A Sbjct: 126 APGVSISTVRAGA-IDLKSEMESGRVDLAIGAFDNLSEALYQRRLFRQEYVSMFRIGHAL 184 Query: 185 AKRTARDAMSIEDYLSLPH-AAPSQILPGYHGTIDTFLEKQNLHRNVVVESAHFRMLPYM 243 K R +S++++L+ H SQ P + I+ LEK + +V HF +PY+ Sbjct: 185 DK-PGRGEVSLKEFLAAEHLMVSSQESP--YDRINQNLEKAGILPSVRFRVPHFTAVPYI 241 Query: 244 VAQTDLVLTAGQQFASFYEKLLGLKSYTVPIKFPPLRFYQLWHERVHQATEHKWLRAQVS 303 V+ T LV+T ++ A GL+ P++ P L+ WH R +Q + WLR +S Sbjct: 242 VSSTALVVTVPRKLAESAAAPFGLRYIKPPLRLPSLQTNMFWHRRYNQDEGNVWLRGFIS 301 >gi|300310675|ref|YP_003774767.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 107 bits (266), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/297 (24%), Positives = 134/297 (45%), Gaps = 9/297 (3%) Query: 6 DHLDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGARGMVPT 65 +++D++L+R+ + E++++ +L+ QP++S +L +LR++ DPL +R GM PT Sbjct: 5 NNMDLNLLRVFQAIADERSLTLAGNRLHLSQPAVSYALGRLRQIFDDPLFIRTKEGMQPT 64 Query: 66 QHGESLLKPAKRILDETERLFVPKTAFVPQEEERTFHIAAPDYMNTPFFTEVIARLRRES 125 L KP R L + F P + R F + D F ++ L ++ Sbjct: 65 PAALELAKPINRALQAVQDALRYTERFDPAQSTRVFRASMTDVAEMMFLPDLCEILTAQA 124 Query: 126 PRSRIVIHALGPDTDYVRLLSDGELDLVIANWDE-PPAHLHLSKLFDDPIVCLMRADCAY 184 P R+ + + P L G+LD N P H LF + VCLMR Sbjct: 125 PDVRLQVEQV-PPAHLEEALRTGQLDFAFGNLPALKPVTCH-ELLFRETYVCLMRQRDGL 182 Query: 185 AKRTARDAMSIEDYLSLPHAAPSQILPGYHGTIDTFLEKQNLHRNVVVESAHFRMLPYMV 244 +R + ++++L++ H +H ++F +K + R + + HF +LP ++ Sbjct: 183 PQRA---QLELDEFLAMSHVLVESAESSHHQVENSF-QKLGVQRRISLSIPHFTVLPRIL 238 Query: 245 AQTDLVLTAGQQFASFY--EKLLGLKSYTVPIKFPPLRFYQLWHERVHQATEHKWLR 299 ++DLV T + A + E SY +P+ P + WH+ + WLR Sbjct: 239 GKSDLVATVPARIARLFHSEHPGVFVSYQLPVNIPVVEVTLHWHQSFDHDAGNSWLR 295 >gi|300314079|ref|YP_003778171.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 106 bits (265), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/309 (26%), Positives = 142/309 (45%), Gaps = 20/309 (6%) Query: 8 LDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGARGMVPTQH 67 LD++L+R+ ++ E+N++R A L QP++S +LR+LR+ D L++R A G+ PT Sbjct: 6 LDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGVKPTPR 65 Query: 68 GESLLKPAKRILDETERLFVPKTAFVPQEEERTFHIAAPDYMNTPFFTEVIARLRRESPR 127 E L +R L E E + P++ F + TF +A D + ++ + R++PR Sbjct: 66 AEELWPTVRRALSELEAVIAPES-FDISRAQNTFRMAMVDATAALWLPSLVRTIMRDAPR 124 Query: 128 SRIVIHALGPDTDYVRLLSDGELDLVIANWDEPPAHL-----------HLSKLFDDPIVC 176 +I + L D +L G++DL + + A L ++L+ VC Sbjct: 125 IKIRMMPL-TTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTGQYVC 183 Query: 177 LMRADCAYAKRTARDAMSIEDYLSLPHAAPSQILPGY-HGTIDTFLEKQNLHRNVVVESA 235 +M A + ++++ Y + H S L G H ID L N R +++ Sbjct: 184 VMHKSHPLAGQ----PLTLDSYCNADHLLVS--LSGKPHAVIDDVLAGMNRERKILLTVN 237 Query: 236 HFRMLPYMVAQTDLVLTAGQQFASFYEKLLGLKSYTVPIKFPPLRFYQLWHERVHQATEH 295 F +VA ++L+ + + L +P + P LWHER + H Sbjct: 238 QFFTAGRIVASSELITVLPRHLVAATGMAEALVVKELPFQTPEEHVDMLWHERDARNPAH 297 Query: 296 KWLRAQVSA 304 KWLRA +SA Sbjct: 298 KWLRAHLSA 306 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 989,622 Number of extensions: 40338 Number of successful extensions: 171 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 161 Number of HSP's successfully gapped: 12 Length of query: 314 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 229 Effective length of database: 1,217,395 Effective search space: 278783455 Effective search space used: 278783455 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)