BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0427.p
         (309 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312918|ref|YP_003777010.1| xanthine/uracil permease [Herba...    61   1e-10

>gi|300312918|ref|YP_003777010.1| xanthine/uracil permease
           [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 140/317 (44%), Gaps = 70/317 (22%)

Query: 9   DERLPVFKLFALGMQHVLVMYAGAIAVPLIIGGALNLPKSEIAYLISADLFCCGLVTIIQ 68
           DERLP  +  A+G+QHV+ M+   +  PL++G                  F   L  ++ 
Sbjct: 26  DERLPAPQTLAMGVQHVVAMFGSTVLAPLLMG------------------FDPNLAILMS 67

Query: 69  SAGLWKF----GIRMPVMMGVTFAAVGPMVAM----ANNPQLSILHIYGAVIASG-VFCI 119
             G   F    G R+P  +G +F+ +G ++A+     + P  ++    G +IA G V+ +
Sbjct: 68  GVGTLLFFLLVGGRVPSYLGSSFSFIGLVIAVTGYAGSGPNTNLGVALGGIIACGAVYAV 127

Query: 120 L-------ASPYMSKLMRYFPPVVTGTVITVIGVSLMGVGINWAAGGQPVIGKLVDGVFV 172
           +        + ++  LM   PPVVTG V+ VIG++L            P+  K V     
Sbjct: 128 IGLIVAGVGTRWIESLM---PPVVTGAVVAVIGLNL-----------APIAVKGVS---- 169

Query: 173 KVPNPDYGSPLSLSIAAVVLVSILLITKYTRGFISNISVLMGMVVGFVI------AFALG 226
                  GS     +A   ++ +  +  +TRG +  + +L+G+++ +V+         LG
Sbjct: 170 -------GSSFDSWMALATILCVGGVAVFTRGMLQRLLILVGLLLAYVLYAVLTNGLGLG 222

Query: 227 K-ISFDGLDAADWFAFIQPFHYGLPQFDIASIISMCLVMIVTMIESTGMFMALGDIVGRR 285
           K I F  +  A WF    P H+  P F   ++  +  V I+ + E+ G   A+  + G+ 
Sbjct: 223 KPIDFSTVANAAWFGV--P-HFAAPVFHAGAMALLAPVAIILVAENLGHIKAVSAMTGQN 279

Query: 286 IDDRTLASGLLXGGMAC 302
           + DR +    +  G+A 
Sbjct: 280 L-DRYIGRAFVGDGLAT 295


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.143    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 881,828
Number of extensions: 34971
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,217,395
Effective search space: 272696480
Effective search space used: 272696480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)