BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0425.p (634 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312555|ref|YP_003776647.1| bifunctional OHCU decarboxylase... 1052 0.0 gi|300313822|ref|YP_003777914.1| N-carbamoyl-L-amino acid amidoh... 403 e-113 gi|300313936|ref|YP_003778028.1| amidohydrolase [Herbaspirillum ... 192 7e-50 >gi|300312555|ref|YP_003776647.1| bifunctional OHCU decarboxylase/N-carbamoyl-L-amino acid amidohydrolase [Herbaspirillum seropedicae SmR1] Length = 587 Score = 1052 bits (2720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 517/586 (88%), Positives = 544/586 (92%) Query: 48 MTTTLEQLNAAETSAFIAALHGIYEHSPWIPERAALQRPFRNLTAFKLALHKVVTDASRA 107 MT TL+ LN A S F AAL GIYEHSPWI ERAA QRPF +TA KLAL V ASRA Sbjct: 1 MTITLQDLNQASASDFTAALQGIYEHSPWIAERAAPQRPFSTITALKLALQSRVNQASRA 60 Query: 108 EQLGLIRAHPELAGRAAIAGELTAESTGEQAKAGLNLCSPEEFARLQQLNADYNAKFGFP 167 EQLGLIRAHPELAGRAAIAGELTAESTGEQAKAGL+LCSPEEFARLQQLNADYNA+FGFP Sbjct: 61 EQLGLIRAHPELAGRAAIAGELTAESTGEQAKAGLHLCSPEEFARLQQLNADYNARFGFP 120 Query: 168 FILAVKGPTGAGLTRQQIIATFARRLRNQPEDELREALRQIGRIAEMRINDLLGYRPAMG 227 FILAVKGPTGAGLTRQQIIATF RRLRNQ EDELRE+LRQIGRIAE+R+N+LLG++P +G Sbjct: 121 FILAVKGPTGAGLTRQQIIATFTRRLRNQVEDELRESLRQIGRIAEIRLNELLGHQPTLG 180 Query: 228 ATVMQWAEEIGALSEDEGALTCTYLTETHQRTAQQIAQWMREAGMHVHIDAVGNVVGRYL 287 ATVMQWAEEIGALSE+EGALTCTYLTETHQRTA QIAQWMREAGM VHIDAVGNVVGRY Sbjct: 181 ATVMQWAEEIGALSEEEGALTCTYLTETHQRTAAQIAQWMREAGMQVHIDAVGNVVGRYQ 240 Query: 288 STDPQARTLLTGSHYDTVRNGGKYDGREGILLPIAVVKHLHERGETLPFHFEVIGFSEEE 347 S PQA+TLLTGSHYDTVRNGGKYDGREGILLPIAVVK+LHERGETLPFH EVIGFSEEE Sbjct: 241 SPHPQAKTLLTGSHYDTVRNGGKYDGREGILLPIAVVKYLHERGETLPFHLEVIGFSEEE 300 Query: 348 GVRFKSTFLGSNAVTGHFDMKLLDLQDKDGISMREVITQAGHDVAAIPQIARDPADILGY 407 GVRFKSTFLGSNA+TGHFDM LLDL+DK+ ++MRE+I QAGHDVAAIPQIARDPA+IL Y Sbjct: 301 GVRFKSTFLGSNAITGHFDMALLDLRDKEDVTMRELIIQAGHDVAAIPQIARDPAEILAY 360 Query: 408 VEVHIEQGPVLLNRDLPVGIVTSIAGSSRYLVELKGVASHAGTTPMDMRKDAAAAAAEII 467 VEVHIEQGPVLL RDLPVGIVTSIAGSSRYLV+LKGVASHAGTTPMDMRKDAAAAAAEII Sbjct: 361 VEVHIEQGPVLLKRDLPVGIVTSIAGSSRYLVDLKGVASHAGTTPMDMRKDAAAAAAEII 420 Query: 468 LYVEQRCSQDQHAALVGTVGQLQVPRGSTNVIPGACQLSLDIRAAVDEVRMAAVKDILGK 527 LYVEQRCSQDQHAALVGTVGQLQVPRGSTNVIPGACQLSLDIRAA DEVR+AAVKDIL K Sbjct: 421 LYVEQRCSQDQHAALVGTVGQLQVPRGSTNVIPGACQLSLDIRAATDEVRLAAVKDILAK 480 Query: 528 IEEICGRRSIDFKLEETLSAAAAPCAPWLMDQLRAATERAGVTPFELASGAGHDAMAIAN 587 IEEIC RRSID KLEETLSA AAPCAPWLM QL AAT+RAGV PFELASGAGHDAMA+ Sbjct: 481 IEEICTRRSIDLKLEETLSAPAAPCAPWLMAQLSAATQRAGVPPFELASGAGHDAMAMVR 540 Query: 588 LTDVCMLFTRCGNGGISHNPLETMTADDAEVSGQILLDFLRSFEAK 633 LTDVCMLFTRCGNGGISHNPLETMTADDAEVSGQILLDFLR+F+AK Sbjct: 541 LTDVCMLFTRCGNGGISHNPLETMTADDAEVSGQILLDFLRNFKAK 586 >gi|300313822|ref|YP_003777914.1| N-carbamoyl-L-amino acid amidohydrolase [Herbaspirillum seropedicae SmR1] Length = 417 Score = 403 bits (1035), Expect = e-113, Method: Compositional matrix adjust. Identities = 209/407 (51%), Positives = 268/407 (65%), Gaps = 4/407 (0%) Query: 227 GATVMQWAEEIGALSEDEGALTCTYLTETHQRTAQQIAQWMREAGMHVHIDAVGNVVGRY 286 G MQWA+++ +E G LT TYLT HQ A +A+WM EAGM V D GNV+GRY Sbjct: 12 GRQAMQWAQQLAQHTESPGMLTRTYLTPQHQAAAAALARWMEEAGMRVRRDNAGNVIGRY 71 Query: 287 LST--DPQARTLLTGSHYDTVRNGGKYDGREGILLPIAVVKHLHERGETLPFHFEVIGFS 344 + A + +TGSH+DTVRNGG YDG GI+LP+A + H +G+ F EVIGF+ Sbjct: 72 EAAPGHESAPSFVTGSHFDTVRNGGWYDGNLGIVLPLACIARWHRQGQRFAFPIEVIGFA 131 Query: 345 EEEGVRFKSTFLGSNAVTGHFDMKLLDLQDKDGISMREVITQAGHDVAAIPQIARDPADI 404 EEEGVRFK+T LGS V G FD +L+ +D DG++MR I AG D I A P + Sbjct: 132 EEEGVRFKATLLGSRTVAGTFDQAVLENRDSDGVTMRAAIRAAGLDPDGIAADAWQPGSM 191 Query: 405 LGYVEVHIEQGPVLLNRDLPVGIVTSIAGSSRYLVELKGVASHAGTTPMDMRKDAAAAAA 464 +VEVHIEQGP+LLN DLPVG+VT+I+G+SR++ E+ G+A HAGT PM +R+DAA AAA Sbjct: 192 AAFVEVHIEQGPLLLNEDLPVGVVTAISGASRFMAEVHGLAGHAGTVPMHLRRDAAMAAA 251 Query: 465 EIILYVEQRCSQDQHAALVGTVGQLQVPRGSTNVIPGACQLSLDIRAAVDEVRMAAVKDI 524 EI LY+E+RCS LVGT+G L+V +G+ NV+PG S+DIRA D R+AAV D+ Sbjct: 252 EIGLYIERRCSIKPE--LVGTMGLLEVVQGAANVVPGLASFSIDIRAEDDSDRLAAVADV 309 Query: 525 LGKIEEICGRRSIDFKLEETLSAAAAPCAPWLMDQLRAATERAGVTPFELASGAGHDAMA 584 +I+ I RR + L +T AA+ PCAP L L + AG L SGAGHDAMA Sbjct: 310 KAEIDRIAARRQVQLALRQTHEAASVPCAPRLQAALAQSIAAAGWPVRHLPSGAGHDAMA 369 Query: 585 IANLTDVCMLFTRCGNGGISHNPLETMTADDAEVSGQILLDFLRSFE 631 +A L DV MLF RCGNGGISH+P ETMT DA ++ Q+ + F+ Sbjct: 370 LAGLADVAMLFVRCGNGGISHHPDETMTEADAAIAAQVFSHLVEQFQ 416 >gi|300313936|ref|YP_003778028.1| amidohydrolase [Herbaspirillum seropedicae SmR1] Length = 419 Score = 192 bits (488), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 129/392 (32%), Positives = 195/392 (49%), Gaps = 15/392 (3%) Query: 237 IGALSEDEGALTCTYLTETHQRTAQQIAQWMREAGMHVHIDAVGNVVGRYLSTDPQARTL 296 IGA ++ G + LT+ ++ ++ W R GM V +D +GN+ R + + Sbjct: 27 IGATAK--GGVCRLALTDLDKQGRDLVSSWARAEGMSVVVDQIGNIFMRRPGRNNALPPV 84 Query: 297 LTGSHYDTVRNGGKYDGREGILLPIAVVKHLHERGETLPFHFEVIGFSEEEGVRFKSTFL 356 +TGSH DT GGK+DG G+L I VV+ L++ EV ++ EEG RF + Sbjct: 85 MTGSHIDTQPTGGKFDGNYGVLAGIEVVRTLNQHNIQTEAPIEVAVWTNEEGSRFVPVMM 144 Query: 357 GSNAVTGHFDMK-LLDLQDKDGISMREVITQAGHDVAAIPQIARDPADILGYVEVHIEQG 415 GS G F + + D +G +R+ + + G+ I + I Y E HIEQG Sbjct: 145 GSGVFCGAFTLDHAYNATDVEGKKVRDELERIGY----IGEQVCGDHPIGAYYEAHIEQG 200 Query: 416 PVLLNRDLPVGIVTSIAGSSRYLVELKGVASHAGTTPMDMRKDAAAAAAEIILYVEQRCS 475 PVL N D +G+V ++ G S Y + G SHAG TPM++RKDA ++ Y+ Q Sbjct: 201 PVLENADTVIGVVPAVLGLSWYDCTVTGFESHAGPTPMEIRKDAL----QVSTYIMQEVV 256 Query: 476 QDQHAALV---GTVGQLQVPRGSTNVIPGACQLSLDIRAAVDEVRMAAVKDILGKIEEIC 532 H GTVGQ+QV S NVIPG + S+D+R + +D+L +E + Sbjct: 257 AIAHRYAPYGRGTVGQVQVMPNSRNVIPGQVKFSIDLRNVSEASLTRMHEDLLAYLEAMR 316 Query: 533 GRRSIDFKLEETLSAAAAPCAPWLMDQLRAATERAGVTPFELASGAGHDAMAIANLTDVC 592 + + +LE P P +D++RAA+ G ++ SGAGHDA+ A L Sbjct: 317 KKTGLSIELERVSYFPPCPFHPDCVDKVRAASAALGYKTMDVVSGAGHDAIYAARLAPAG 376 Query: 593 MLFTRCGNGGISHNPLETMTADDAEVSGQILL 624 M+F C + G+SHN +E + E +LL Sbjct: 377 MIFVPCKD-GVSHNEIEDARPEHLEAGCNVLL 407 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,037,199 Number of extensions: 89621 Number of successful extensions: 272 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 267 Number of HSP's successfully gapped: 3 Length of query: 634 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 543 Effective length of database: 1,188,985 Effective search space: 645618855 Effective search space used: 645618855 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)