BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0420.p (230 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313824|ref|YP_003777916.1| GntR family transcription regul... 418 e-118 gi|300313534|ref|YP_003777626.1| GntR family transcription regul... 132 2e-32 gi|300313540|ref|YP_003777632.1| transcription regulator protein... 112 3e-26 gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 69 3e-13 gi|300311599|ref|YP_003775691.1| transcription regulator protein... 58 6e-10 >gi|300313824|ref|YP_003777916.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 418 bits (1075), Expect = e-118, Method: Compositional matrix adjust. Identities = 209/224 (93%), Positives = 216/224 (96%) Query: 7 APAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDL 66 APAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDL Sbjct: 5 APAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDL 64 Query: 67 IPDKGAFVSKPTVEETRNLFFVRRALEAAMVRQFVACATEADYARLEAHLEQERQAVKDD 126 IPDKGAFVSKPTVEETRN+FFVRR LE+AMVR+FVA AT DYARLEAHLE ERQAV DD Sbjct: 65 IPDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDD 124 Query: 127 NMQVRSSLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHGAFI 186 NMQVRS+LLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEH AFI Sbjct: 125 NMQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFI 184 Query: 187 AAARAGDVEKAVELMEHHLLHVEQALAFEPKSGPRKDLLRELLS 230 AAARAGD E+A+ELMEHHLLHVEQALAFEPK+GPRKDLLRELLS Sbjct: 185 AAARAGDTERAMELMEHHLLHVEQALAFEPKAGPRKDLLRELLS 228 >gi|300313534|ref|YP_003777626.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 132 bits (332), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 121/224 (54%), Gaps = 1/224 (0%) Query: 8 PAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLI 67 P+ SS IA I I A++L PG +L E+ LA +++VSRT++R AL L +V + Sbjct: 5 PSLKSSSQIAVRITEAILAKQLAPGTRLGEQQLADLFKVSRTQVREALTHLMARGIVTVS 64 Query: 68 PDKGAFVSKPTVEETRNLFFVRRALEAAMVRQF-VACATEADYARLEAHLEQERQAVKDD 126 +G FV +PT + R F RR +E ++RQ + + +L H+ +E A+ Sbjct: 65 ARRGWFVIEPTPAQAREAFEARRVIELGLLRQARLRPVGDTAIGQLREHIAREEAAIAGA 124 Query: 127 NMQVRSSLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHGAFI 186 ++ RS LL DFH+ LA +GN +L + L L R+ L ML+QS+ A S EH + Sbjct: 125 DVGARSYLLGDFHVCLAECLGNSLLAETLRDLTARTTLTAMLHQSSEQAEDSCSEHVLIV 184 Query: 187 AAARAGDVEKAVELMEHHLLHVEQALAFEPKSGPRKDLLRELLS 230 A GD+E+A +LM HL HVE L S P + L + L S Sbjct: 185 EALERGDLEQAEQLMHDHLQHVESGLNQVRSSDPLEPLRQALAS 228 >gi|300313540|ref|YP_003777632.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 112 bits (280), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 106/205 (51%), Gaps = 6/205 (2%) Query: 7 APAPDSSDAIA------SDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAK 60 APA + +A+A DI I RLPP KL E+ L ++Y +R +R L LA Sbjct: 16 APARERDNAVAVEERMYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLARLAA 75 Query: 61 DKLVDLIPDKGAFVSKPTVEETRNLFFVRRALEAAMVRQFVACATEADYARLEAHLEQER 120 + +VDL ++GAF++ P+ E R++F +R LE A++ + A A L +E+ER Sbjct: 76 EGMVDLEANRGAFIASPSPAEVRDMFELRNILEHAVLEKLGHTAGTRQIAGLRRMVEEER 135 Query: 121 QAVKDDNMQVRSSLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSE 180 + + L + FH+ LA + GN +L + L KL R+ L+ ++ ACS + Sbjct: 136 DCYLNGDRPRWIRLSAQFHLALAELTGNALLVETLRKLVSRTTLMIAKTEAPGHNACSFD 195 Query: 181 EHGAFIAAARAGDVEKAVELMEHHL 205 EH + A GD++ A M HHL Sbjct: 196 EHETVLEALEKGDIKAAQAHMAHHL 220 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 68.9 bits (167), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 3/196 (1%) Query: 13 SDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIPDKGA 72 ++A+ I IA +L PG L E +LA + VSRT IR AL+ LA +V++ P +GA Sbjct: 8 AEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRPRRGA 67 Query: 73 FVSKPTVEETRNLFFVRRALEAAMVRQFVACATEADYARLEAHLEQERQAVKDDNMQVRS 132 V++ ++ +F V EA R T A++A L A Q QA +D N Sbjct: 68 IVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLA-AHQACQAARDANDPDAY 126 Query: 133 SLLSD-FHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSS-EEHGAFIAAAR 190 L++ FH + N L D L R L RD SS +EH A + A Sbjct: 127 FYLNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLKSSFDEHQAVVDAII 186 Query: 191 AGDVEKAVELMEHHLL 206 +GD EK V+L+ H++ Sbjct: 187 SGDAEKTVDLLREHIM 202 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 58.2 bits (139), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 62/220 (28%), Positives = 92/220 (41%), Gaps = 21/220 (9%) Query: 1 MTASVPAPAPDS-----SDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAAL 55 M+ + P D S+ + I + I + PG+K+ E LAR Y +SR +R A+ Sbjct: 1 MSELISLPGNDREGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAI 60 Query: 56 VMLAKDKLVDLIPDKGAFVSKPTVEETRNLFFVRRALEAAMVRQFVACATEADYARLEAH 115 L L+ +P GA V T+E LF +R +LE R + A+ L Sbjct: 61 HRLEGQNLLVRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRV 120 Query: 116 LEQERQAVKDDNMQVRSSLLS-----DFHILLARIVGNDVLTDIL-EKLAGRSALITMLY 169 L+ KD+ Q DFH + + GN +LT IL +L + + + Y Sbjct: 121 LDTHE---KDEAFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQY 177 Query: 170 QST----RDAACSSEEHGAFIAAARAGDVEKAVELMEHHL 205 +T R A EH + A GD E A LM H+ Sbjct: 178 SATPHRPRQAFA---EHHRILDALADGDGELADLLMRRHI 214 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.131 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 564,971 Number of extensions: 19788 Number of successful extensions: 122 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 118 Number of HSP's successfully gapped: 8 Length of query: 230 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 148 Effective length of database: 1,231,600 Effective search space: 182276800 Effective search space used: 182276800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)