BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0419.p (598 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis tra... 1073 0.0 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 540 e-155 gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis tra... 477 e-135 gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis tra... 448 e-127 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 332 6e-92 >gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 1073 bits (2776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 552/598 (92%), Positives = 579/598 (96%) Query: 1 MLNSIKARILFYTIALLVASLAVVGTVSFFIIQTDNDRAIERNAQAVATGFGSTINEWVA 60 M NSIKARILFYTI LL+ASLAVVGTVSFFII+ DNDRAIERNA++VA+GFGSTINEWVA Sbjct: 1 MFNSIKARILFYTITLLIASLAVVGTVSFFIIKLDNDRAIERNAESVASGFGSTINEWVA 60 Query: 61 ARTAMTVAAAEGVQGADPVFVIKLLQKSGGFYVTTLGREDKTAFTSAAEGLPAGYDPTAR 120 ARTAMTVAAA+GV ADPVFVIK LQKSGGFYVTTLG+EDKTAFTSAAEGLPAGYDPTAR Sbjct: 61 ARTAMTVAAADGVLNADPVFVIKTLQKSGGFYVTTLGKEDKTAFTSAAEGLPAGYDPTAR 120 Query: 121 PWYKQAVAAGKPVLTKPYTDVATKKPMVSFTAPVMQNGQRVGVVAAAMFLDGVSEVVRAI 180 PWYKQAVAAGKPVLTKPYTDVATKKPMVSFTAPVMQNGQR GVVAAAMFLDGVS+VVR+I Sbjct: 121 PWYKQAVAAGKPVLTKPYTDVATKKPMVSFTAPVMQNGQRAGVVAAAMFLDGVSDVVRSI 180 Query: 181 HPTPASYAFLVDRDGLMLAHPDGQWVNKPAKEWNAELTSERLQSLGGDDKVSALQLDGAA 240 HPTPAS+AFLVDRDGLMLAHPDGQWVNKPAKEWNAELT ERL +L DDK S + L+GAA Sbjct: 181 HPTPASFAFLVDRDGLMLAHPDGQWVNKPAKEWNAELTPERLNALAADDKASEVMLEGAA 240 Query: 241 KLIKGIPIKGTEWTLMLAMDKADVTAGMRNATRSALIALVLVALVAAGIMSVITTAVFQR 300 KL+KG+PIKGTEWTLMLAMDKADVTAG+RNA+RSALIALVLVALVAAGIMS+ITTAVFQR Sbjct: 241 KLVKGVPIKGTEWTLMLAMDKADVTAGLRNASRSALIALVLVALVAAGIMSLITTAVFQR 300 Query: 301 LSRVRRAMDSLSSGNGDLTLRLDEDGKDELTQISRSFNQFVNQITGILQDVRRSSDTVKI 360 LSRVRRAMD+LSSGNGDLTLRL EDG DE+TQISRSFN FVNQITGILQDVRRSSDTVKI Sbjct: 301 LSRVRRAMDNLSSGNGDLTLRLTEDGSDEVTQISRSFNTFVNQITGILQDVRRSSDTVKI 360 Query: 361 SSTEIASGNQDLSARTEQQAGALEETASAMEQLTSTVQQNSESARRANELAGNASRIAAQ 420 SSTEIA+GNQDLSARTEQQAGALEETASAME+LTSTVQQNSE+ARRANELAGNAS+IAAQ Sbjct: 361 SSTEIATGNQDLSARTEQQAGALEETASAMEELTSTVQQNSENARRANELAGNASKIAAQ 420 Query: 421 GGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 480 GGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV Sbjct: 421 GGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 480 Query: 481 ASEVRSLAQRSAQAAKEIKQLIDNSVSKVADGGVLVAQAGQTMEQIVASIRDVSVIVSEI 540 ASEVRSLAQRSAQAAKEIK LID+SVSKVADGGVLV QAGQTMEQIVASIRDVSVIVSEI Sbjct: 481 ASEVRSLAQRSAQAAKEIKVLIDSSVSKVADGGVLVTQAGQTMEQIVASIRDVSVIVSEI 540 Query: 541 AHASSEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAAKSLQDEAHRLSVLVGGFKM 598 AHAS+EQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAA+SLQDEAHRLSVLVGGFKM Sbjct: 541 AHASAEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAARSLQDEAHRLSVLVGGFKM 598 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 540 bits (1392), Expect = e-155, Method: Compositional matrix adjust. Identities = 308/599 (51%), Positives = 421/599 (70%), Gaps = 7/599 (1%) Query: 1 MLNSIKARILFYTIALLVASLAVVGTVSFFIIQTDNDRAIERNAQAVATGFGSTINEWVA 60 ML+S++AR++F + ++ ++ ++ + F +++D AI Q + + I+EWV Sbjct: 1 MLSSLRARLIFICVLIVALAMIILSAANIFTVRSDTLEAISSQTQQLTESHAANISEWVR 60 Query: 61 ARTAMTVAAAEGVQGADPVFVIKLLQKSGGFYVTTLGREDKTAFTSAAEGLPAGYDPTAR 120 ++ +T A + ++ +D + ++ Q++G F +G DK A +PAGYDPTAR Sbjct: 61 SKRVVTGAMKQALKQSDVLPIVAAAQEAGSFDDAYIGYPDKRML--ALHPMPAGYDPTAR 118 Query: 121 PWYKQAVAAGKPVLTKPYTDVATKKPMVSFTAPVMQNGQRVGVVAAAMFLDGVSEVVRAI 180 PWYKQAV AGKPVLT PY D T K +V+F PV V+ + + LD V V I Sbjct: 119 PWYKQAVEAGKPVLTAPYVDATTGKLVVTFAEPVGDKSNLQAVLGSDVQLDNVVRTVAGI 178 Query: 181 HPTPASYAFLVDRDGLMLAHPDGQWVNKPAKEWNAELTSERLQSLGGDDKVSALQLDGAA 240 PTP+S+AF+V +DG+++ HP+ + KP + L++ QSL G + + + G Sbjct: 179 KPTPSSFAFIVGKDGVIITHPNKELALKPVSSLDQTLSA---QSLAGMKQGGSATIGGIR 235 Query: 241 KLIKGIPIKGTEWTLMLAMDKADVTAGMRNATRSALIALVLVALVAAGIM-SVITTAVFQ 299 L+ PI T+W+L++A+D + T + A + L ++A+VA+ I+ S T + + Sbjct: 236 YLLFTQPIANTDWSLVVALDYREATHAI-GALMTLSTVLAVLAIVASAILLSYTITRLLR 294 Query: 300 RLSRVRRAMDSLSSGNGDLTLRLDEDGKDELTQISRSFNQFVNQITGILQDVRRSSDTVK 359 RL VR AM+ ++SG+GDLT RLD GKDEL QISR+FN F ++I+ L D+RR+S++VK Sbjct: 295 RLGVVRNAMEEIASGDGDLTRRLDTSGKDELAQISRAFNHFADKISRTLLDIRRASESVK 354 Query: 360 ISSTEIASGNQDLSARTEQQAGALEETASAMEQLTSTVQQNSESARRANELAGNASRIAA 419 +SS+EIASGN DLSARTEQQAG+LEETASAME+LTSTV+QN+++AR+AN+LA +AS +A Sbjct: 355 VSSSEIASGNMDLSARTEQQAGSLEETASAMEELTSTVKQNADNARQANQLAVSASDVAV 414 Query: 420 QGGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAV 479 GG+VVG VV+TM +IN SSR+I DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAV Sbjct: 415 HGGQVVGQVVATMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAV 474 Query: 480 VASEVRSLAQRSAQAAKEIKQLIDNSVSKVADGGVLVAQAGQTMEQIVASIRDVSVIVSE 539 VASEVRSLAQRSA AAKEIK LID+SV KV G LVAQAG TME++V+S+R V+ IV E Sbjct: 475 VASEVRSLAQRSATAAKEIKGLIDDSVQKVETGSQLVAQAGSTMEEVVSSVRRVTDIVGE 534 Query: 540 IAHASSEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAAKSLQDEAHRLSVLVGGFKM 598 I+ AS EQ+ GI EV A+ +DE TQQNAALVEQAAAAAKSLQ++A L+ +V GFK+ Sbjct: 535 ISAASQEQSSGITEVGNAVNQMDEATQQNAALVEQAAAAAKSLQEQAAHLAAVVAGFKL 593 >gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 625 Score = 477 bits (1228), Expect = e-135, Method: Compositional matrix adjust. Identities = 272/597 (45%), Positives = 389/597 (65%), Gaps = 1/597 (0%) Query: 3 NSIKARILFYTIALLVASLAVVGTVSFFIIQTDNDRAIERNAQAVATGFGSTINEWVAAR 62 S++ R++ ++V ++ + +F ++ ++ +A + I EW ++ Sbjct: 23 TSLRTRLIALCAGIVVLAMLAIVLTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWSDSK 82 Query: 63 TAMTVAAAEGVQGADPVFVIKLLQKSGGFYVTTLGREDKTAFTSAAEGLPAGYDPTARPW 122 + + E ADP+ +K Q +GGF + LG DK A S YDPT RPW Sbjct: 83 KLVVTSIKEAADAADPLPFVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAPDYDPTKRPW 142 Query: 123 YKQAVAAGKPVLTKPYTDVATKKPMVSFTAPVMQNGQRVGVVAAAMFLDGVSEVVRAIHP 182 Y+QA +PVLT PYT +T K +V+F V ++GQ V AA + LD V V AI P Sbjct: 143 YQQAAKTSEPVLTAPYTSASTGKLLVTFAQSVSKDGQVAAVAAADVLLDTVVADVVAIKP 202 Query: 183 TPASYAFLVDRDGLMLAHPDGQWVNKPAKEWNAELTSERLQSLGGDDKVSALQLDGAAKL 242 TP SYAFL D G ++AHP+ + KP + +A +T + L + LDG ++ Sbjct: 203 TPNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVHQDVALDGRRQM 262 Query: 243 IKGIPIKGTEWTLMLAMDKADVTAGMRNATRSALIALVLVALVAAGIMSVITTAVFQRLS 302 + + GT+W L++A+D+AD A + S+ + VLV ++AA ++ + + + RL+ Sbjct: 263 LFVARVGGTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLGALISRLLGRLT 322 Query: 303 RVRRAMDSLSSGNGDLTLRLDEDGK-DELTQISRSFNQFVNQITGILQDVRRSSDTVKIS 361 V+ A++ ++ G+GDLT RLD G+ DEL +I +FN+FV++I ++ D+R +S T+ + Sbjct: 323 VVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMIDIRDASHTIHAA 382 Query: 362 STEIASGNQDLSARTEQQAGALEETASAMEQLTSTVQQNSESARRANELAGNASRIAAQG 421 S +IASGN DLS RTE QA +LE+TA+AMEQLTS+V+ N+++A +AN+L+ +AS+IA QG Sbjct: 383 SRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQLSQSASQIATQG 442 Query: 422 GEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 481 G +V VV TM INASS++I DII+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 443 GTMVEQVVQTMNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 502 Query: 482 SEVRSLAQRSAQAAKEIKQLIDNSVSKVADGGVLVAQAGQTMEQIVASIRDVSVIVSEIA 541 SEVRSLAQRSA AAKEIK LI +SV +V G VAQAG T+ +V S++ VS +V+EI Sbjct: 503 SEVRSLAQRSATAAKEIKVLITDSVGQVQAGEDTVAQAGATIRSVVDSVQKVSDVVAEIT 562 Query: 542 HASSEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAAKSLQDEAHRLSVLVGGFKM 598 AS EQ+ GI + N A+ H+D+ TQQNAALVEQAAA A+SLQ++A RL+ +V F++ Sbjct: 563 AASREQSQGINQANDAVAHMDQTTQQNAALVEQAAAGAQSLQEQAERLAGIVALFRL 619 >gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 448 bits (1153), Expect = e-127, Method: Compositional matrix adjust. Identities = 248/598 (41%), Positives = 389/598 (65%), Gaps = 2/598 (0%) Query: 1 MLNSIKARILFYTIALLVASLAVVGTVSFFIIQTDNDRAIERNAQAVATGFGSTINEWVA 60 ML+S++AR++ I L+++S+ + ++ I + + A + + + I +W+A Sbjct: 1 MLSSLRARVICALILLVISSVLISTAANYLIARKGLNAATDDDLATAVDQHAAVIGDWLA 60 Query: 61 ARTAMTVAAAEGVQGADPVFVIKLLQKSGGFYVTTLGREDKTAFTSAAEGLPAGYDPTAR 120 ++ M + + +DP ++K +Q +GGFY +G DK A + +PA YDPT R Sbjct: 61 GKSKMIASLEDISLTSDPDAMLKQIQVAGGFYDVGVGYPDKRAKFTDWPNIPATYDPTTR 120 Query: 121 PWYKQAVAAGKPVLTKPYTDVATKKPMVSFTAPVMQNGQRVGVVAAAMFLDGVSEVVRAI 180 PWYK + AGKPV PY + +V+ PVM++G VV + LD V E +++I Sbjct: 121 PWYKGVLQAGKPV-ALPYVST-SGLLLVALARPVMRDGVLKAVVVGDVALDSVVENIKSI 178 Query: 181 HPTPASYAFLVDRDGLMLAHPDGQWVNKPAKEWNAELTSERLQSLGGDDKVSALQLDGAA 240 HPTP+S+ LV++ G ++AHPD Q K A E E + + + G + +DG Sbjct: 179 HPTPSSFGMLVEQGGRIIAHPDAQLRFKQASELAPEFSDLNVANAGPGQPPVHIVVDGRE 238 Query: 241 KLIKGIPIKGTEWTLMLAMDKADVTAGMRNATRSALIALVLVALVAAGIMSVITTAVFQR 300 KL++ + GT+W +++A+D+ + +AG+R S+L++LV V + A+ I + +T F+R Sbjct: 239 KLVRVQAVPGTDWNIVVAIDQQEASAGVRALLASSLLSLVAVVIAASLIGAAVTATAFRR 298 Query: 301 LSRVRRAMDSLSSGNGDLTLRLDEDGKDELTQISRSFNQFVNQITGILQDVRRSSDTVKI 360 L ++ AM ++ SG+GDLT RL + G+DE+ I++SFN FV ++ +++D+R + +TV++ Sbjct: 299 LGQISAAMTAIGSGSGDLTQRLPDHGRDEVAIIAQSFNAFVAKLQSVMRDIRDAGETVRV 358 Query: 361 SSTEIASGNQDLSARTEQQAGALEETASAMEQLTSTVQQNSESARRANELAGNASRIAAQ 420 +S EIA+ N DLS RTE A +LE+TA++M ++++TV +++ +A A++ + A+ IA+Q Sbjct: 359 ASDEIAAANHDLSVRTESAAASLEQTAASMAEISATVDRSATAAHEADQRSSAATGIASQ 418 Query: 421 GGEVVGNVVSTMEAINASSRQIADIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVV 480 GG+VV + V+TM I S QI DII+VIDGIAFQTNILALNAAVE+ARAGEQGRGFAVV Sbjct: 419 GGKVVSDAVATMGEIEKVSAQIGDIISVIDGIAFQTNILALNAAVESARAGEQGRGFAVV 478 Query: 481 ASEVRSLAQRSAQAAKEIKQLIDNSVSKVADGGVLVAQAGQTMEQIVASIRDVSVIVSEI 540 A EVR+LAQRSA AA+E+K L++ ++S+VA G V QAG TM IV DV +++I Sbjct: 479 AHEVRNLAQRSAGAAREVKDLVEATISRVAAGSQQVRQAGGTMRDIVTHTDDVQSAIADI 538 Query: 541 AHASSEQNGGIQEVNLAITHIDEGTQQNAALVEQAAAAAKSLQDEAHRLSVLVGGFKM 598 A ++EQ GIQEVN A+ +D QQNAALVE++AAA+ +LQ +A+ L+ + F++ Sbjct: 539 ARTTTEQTRGIQEVNQAVIQLDGMVQQNAALVEESAAASSTLQQQANVLAATIARFRI 596 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 332 bits (851), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 200/327 (61%), Positives = 246/327 (75%), Gaps = 14/327 (4%) Query: 274 SALIALVLVALVAAGIMSVITTAV--FQRLSRVRRAMDSLSSGNGDLTLRLDEDGKDELT 331 + LIA +L LVA + + AV QR++R GDLTLR+ G+DE Sbjct: 200 TVLIASLLAFLVATNVSRPLKEAVQIAQRVAR------------GDLTLRIRPAGRDETG 247 Query: 332 QISRSFNQFVNQITGILQDVRRSSDTVKISSTEIASGNQDLSARTEQQAGALEETASAME 391 + + + I+ +VR+ +DT+ +S EIA GN DLS RTEQQAG+LEETASAME Sbjct: 248 ALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSLEETASAME 307 Query: 392 QLTSTVQQNSESARRANELAGNASRIAAQGGEVVGNVVSTMEAINASSRQIADIITVIDG 451 +LTSTV QN+++AR+AN+LA AS IA+QGGEVVG VV TME I SSR+IADII+VIDG Sbjct: 308 ELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIADIISVIDG 367 Query: 452 IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKQLIDNSVSKVAD 511 IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK+LID+SV KV+ Sbjct: 368 IAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDDSVQKVSA 427 Query: 512 GGVLVAQAGQTMEQIVASIRDVSVIVSEIAHASSEQNGGIQEVNLAITHIDEGTQQNAAL 571 G LV +AG TM ++VAS+R V+ +V+EI+ A+ EQ+GGI EVNLAIT +DE TQQNAAL Sbjct: 428 GSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDETTQQNAAL 487 Query: 572 VEQAAAAAKSLQDEAHRLSVLVGGFKM 598 VEQAAAAA SL+ +A L+ +VG FK+ Sbjct: 488 VEQAAAAADSLKGQASNLAAVVGKFKL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.127 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,479,289 Number of extensions: 56628 Number of successful extensions: 613 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 363 Number of HSP's successfully gapped: 71 Length of query: 598 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 507 Effective length of database: 1,188,985 Effective search space: 602815395 Effective search space used: 602815395 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)