BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0415.p (183 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313829|ref|YP_003777921.1| sensor histidine kinase [Herbas... 362 e-102 gi|300310848|ref|YP_003774940.1| two component sensor histidine ... 117 6e-28 gi|300313666|ref|YP_003777758.1| two component sensor histidine ... 117 6e-28 gi|300311468|ref|YP_003775560.1| oxidative stress resistance two... 80 8e-17 gi|300313895|ref|YP_003777987.1| two-component system sensor his... 74 6e-15 >gi|300313829|ref|YP_003777921.1| sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 478 Score = 362 bits (930), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/183 (97%), Positives = 180/183 (98%) Query: 1 MDDDAMRTDFHDDLDELDMMVKGALQSVKDSDIHENRTEVRLDALVLRMIRDARLAGHEI 60 MDDDAMRTDFHDDLDELDMMVKGALQSVKDSDIHENRTEVRLDALVLRMIRDARLAGHEI Sbjct: 296 MDDDAMRTDFHDDLDELDMMVKGALQSVKDSDIHENRTEVRLDALVLRMIRDARLAGHEI 355 Query: 61 AFTPSGINVMAKPLALKRAIGNLFDNALYYGQKVEISIRPSAGVGGDLVEIEIRDHGPGV 120 AFTPSGINV+AKPLALKRAIGNLFDNALYYGQKVEISIRPS G GDLVEIEIRDHGPGV Sbjct: 356 AFTPSGINVIAKPLALKRAIGNLFDNALYYGQKVEISIRPSPGAEGDLVEIEIRDHGPGV 415 Query: 121 PEDAMGTLFQPYVRLEHGRAQNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGLIATIIL 180 PEDAMGTLFQPYVRLEHGRAQNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGL+ATIIL Sbjct: 416 PEDAMGTLFQPYVRLEHGRAQNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGLMATIIL 475 Query: 181 PAR 183 PAR Sbjct: 476 PAR 478 >gi|300310848|ref|YP_003774940.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 465 Score = 117 bits (293), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 69/182 (37%), Positives = 102/182 (56%), Gaps = 5/182 (2%) Query: 1 MDDDAMRTDFHDDLDELDMMVKGALQSVKDSDIHENRTEVRLDALVLRMIRDARLAGHEI 60 + D ++ DDL + MV+ L + D E + +D+L+ + DA AG ++ Sbjct: 280 VSDPGLQQKLIDDLGVMHGMVREGLDLARSMDSSEKIQALDIDSLLDSVCADAADAGQDV 339 Query: 61 AFTPSG-INVMAKPLALKRAIGNLFDNALYYGQKVEISIRPSAGVGGDLVEIEIRDHGPG 119 A S VMA+P AL+R + NL DNA YG+ +SI + + I IRD GPG Sbjct: 340 ALQGSTRAFVMAQPGALRRCLTNLIDNACKYGKSARVSI----ALEQQKIAIRIRDQGPG 395 Query: 120 VPEDAMGTLFQPYVRLEHGRAQNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGLIATII 179 +PE + +F+P+ RLE R++++GG GLGL I+ NI + H G+L LRN EGGL + Sbjct: 396 IPESELEAVFEPFYRLEASRSRDTGGTGLGLTIALNIAENHHGQLRLRNLAEGGLEVLLE 455 Query: 180 LP 181 LP Sbjct: 456 LP 457 >gi|300313666|ref|YP_003777758.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 479 Score = 117 bits (293), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 99/181 (54%), Gaps = 4/181 (2%) Query: 1 MDDDAMRTDFHDDLDELDMMVKGALQSVKDSDIHENRTEVRLDALVLRMIRDARLAGHEI 60 + D+ + F DLDE+D ++ L V+D D+ E + LD+L+ + D G E+ Sbjct: 302 LPDERGKEKFRKDLDEMDALISATLNVVQDIDVQERPQLIDLDSLLESLRTDQAEVGGEV 361 Query: 61 AFTPSGINVMAKPLALKRAIGNLFDNALYYGQKVEISIRPSAGVGGDLVEIEIRDHGPGV 120 + + P +L+R + NL +NA+ YGQ+ + ++ A D V I + D GPG+ Sbjct: 362 TLSGHAAPLQGYPRSLRRCLQNLVENAVRYGQRARVQLQDDA----DQVCIRVDDDGPGI 417 Query: 121 PEDAMGTLFQPYVRLEHGRAQNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGLIATIIL 180 PE + + +P+ RLE R +GG GLGL I+ +VQAH G + L N P GGL I++ Sbjct: 418 PEALLERVQEPFYRLERSRNAGTGGFGLGLSIAATVVQAHRGVMKLVNRPGGGLRVEILI 477 Query: 181 P 181 P Sbjct: 478 P 478 >gi|300311468|ref|YP_003775560.1| oxidative stress resistance two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 455 Score = 80.5 bits (197), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 86/187 (45%), Gaps = 13/187 (6%) Query: 4 DAMRTDFHDDLDELDMMVKGALQSVKDSDIHENRTEVRLDALVLRMIRDARLAGHEI--A 61 D R H DL ++D ++ L K D T D L +RL+ + Sbjct: 265 DEARDGMHSDLAQMDSIIGQFLDYAKPFDTSSLETIDLADVLQDVAGNASRLSDIRVHTQ 324 Query: 62 FTPSGINVMAKPLALKRAIGNLFDNALYYGQK-----VEISIRPSAGVGGDLVEIEIRDH 116 TP V L R NL +NA YG+ EI IR + + G V +E+ DH Sbjct: 325 ITPD-TQVAGNGTELARVFSNLVENARRYGKTEGTDCAEIDIR--SRIEGHQVVVEVADH 381 Query: 117 GPGVPEDAMGTLFQPYVRLEHGRAQNSGGMGLGLGISRNIVQAHGGELLLRNHPE--GGL 174 GPGVP + L +P+ RL+ R Q + G GLGL I IV H G+LLL+ H E GL Sbjct: 382 GPGVPVNECERLLRPFTRLDTARGQ-ANGSGLGLAIVNRIVLKHNGKLLLKGHEETRSGL 440 Query: 175 IATIILP 181 + I LP Sbjct: 441 LVQITLP 447 >gi|300313895|ref|YP_003777987.1| two-component system sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 74.3 bits (181), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 7/123 (5%) Query: 64 PSGINVMAKPLALKRAIGNLFDNALYY---GQKVEISIRPSAGVGGDLVEIEIRDHGPGV 120 P+ + V L++ + NLF+N+L Y G ++++ A + + D PGV Sbjct: 349 PASMPVHGDAARLQQLLSNLFENSLRYTDAGGRLQVH----AHLQQQHWHLVFDDSEPGV 404 Query: 121 PEDAMGTLFQPYVRLEHGRAQNSGGMGLGLGISRNIVQAHGGELLLRNHPEGGLIATIIL 180 P + M LF+ + R+E R + SGG GLGL I R IV AH G + P GGL ++L Sbjct: 405 PPEVMARLFERFFRVEASRNRASGGAGLGLAICRRIVDAHQGTIGASASPLGGLRVVVVL 464 Query: 181 PAR 183 PAR Sbjct: 465 PAR 467 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.141 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 634,455 Number of extensions: 28284 Number of successful extensions: 174 Number of sequences better than 1.0e-08: 25 Number of HSP's gapped: 172 Number of HSP's successfully gapped: 25 Length of query: 183 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 103 Effective length of database: 1,241,070 Effective search space: 127830210 Effective search space used: 127830210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)