BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0412.p
         (445 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313831|ref|YP_003777923.1| sugar ABC transporter periplasm...   835   0.0  
gi|300309614|ref|YP_003773706.1| sugar ABC transporter periplasm...    66   6e-12

>gi|300313831|ref|YP_003777923.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 446

 Score =  835 bits (2156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/446 (89%), Positives = 422/446 (94%), Gaps = 1/446 (0%)

Query: 1   MIKTKRPANARVGPARFGLAVLCLLALALGLAALPAHAQVPAAGPSPATGN-ALQVLHWW 59
           M +TKRPANAR GPAR GLA +CL AL L L  LPA AQ P++   PAT   +LQVLHWW
Sbjct: 1   MTRTKRPANARTGPARCGLAAVCLCALTLWLGGLPAQAQSPSSPVPPATATGSLQVLHWW 60

Query: 60  TSASERQAINVVVNQLAKQDIQWRDVAIPGGAGMGAAKVLKSMVLANRAPEVTQLNGVVF 119
           TSASERQAINVVVNQLAKQDIQWRDVAIPGGAGMGAAKVLKSMVLANRAPEVTQLNGVVF
Sbjct: 61  TSASERQAINVVVNQLAKQDIQWRDVAIPGGAGMGAAKVLKSMVLANRAPEVTQLNGVVF 120

Query: 120 GEWADLGLLLELDNVAVQGNWEKQMFPTVWSLLNNHGHVVAAPLGIHRINSLFYNTAIFK 179
           GEWADLGLLLELDNVAVQGNWEKQMFPTVWSLLNNHGHVVAAPLGIHRINSL+YN A+FK
Sbjct: 121 GEWADLGLLLELDNVAVQGNWEKQMFPTVWSLLNNHGHVVAAPLGIHRINSLYYNVAVFK 180

Query: 180 RYNLAPPKTWDDFDQIVKKLQGTGIVPLAQSAEAWQLATLFENIALAESGPAYYRRLFVE 239
           RYNL+PPKTWD+FDQIVKKLQG+G+VPLAQSAEAWQLATLFEN+ALAESGPAYYR+LFVE
Sbjct: 181 RYNLSPPKTWDEFDQIVKKLQGSGVVPLAQSAEAWQLATLFENLALAESGPAYYRKLFVE 240

Query: 240 MSPAAYLDARMLHILKRLRSLASAMPQPVRERPWTEVARSVVSGEAAMLIMGDWAKGELN 299
           MSPAAYLDARMLHILKRLR+LA AM QPVRERPWTEVARS+VSGEAAMLIMGDWAKGELN
Sbjct: 241 MSPAAYLDARMLHILKRLRALAGAMAQPVRERPWTEVARSMVSGEAAMLIMGDWAKGELN 300

Query: 300 AWGMEVDQQFGCAPAPGTGDFHLYSTDTLAMFAGNYAHQPMQETLARLTMSPAVQSEYNR 359
           AWGMEVDQQFGCAPAPGTG++HLYSTDTLAMFAGNYAHQPMQETLARLTMSPAVQSEYNR
Sbjct: 301 AWGMEVDQQFGCAPAPGTGEYHLYSTDTLAMFAGNYAHQPMQETLARLTMSPAVQSEYNR 360

Query: 360 IKGSIPVLRAADPHMDRCARDSWRAFSKGPAWQAPSLVHRMATDDTTKDAIVAEVQRFFL 419
           IKGSIPVLRAADPHMDRCARDSWR FSKGP WQAPSLVHRMATDDTTKDAIVAEVQRFF+
Sbjct: 361 IKGSIPVLRAADPHMDRCARDSWRTFSKGPMWQAPSLVHRMATDDTTKDAIVAEVQRFFM 420

Query: 420 DRNLSEEQTQKRLAAIARTLARNRND 445
           DR++SEEQ QKRLA IARTL+RNRND
Sbjct: 421 DRSISEEQAQKRLATIARTLSRNRND 446


>gi|300309614|ref|YP_003773706.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 415

 Score = 65.9 bits (159), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 32/210 (15%)

Query: 104 LANRAPEVTQL-NGVVFGEWADLGLLLELDNVAVQGNWEKQMFPTVWSLLNN----HGHV 158
           L+ +AP++    NG     +A  GLL +     V  +W+K  +   ++        HG  
Sbjct: 78  LSTQAPDIINWHNGERMAFYASRGLLED-----VSEDWKKNGWDATYASTKEASSWHGKQ 132

Query: 159 VAAPLGIHRINSLFYNTAIFKRYNLA-PPKTWDDFDQIVKKLQGTGIVPLAQSA-EAWQL 216
            + P  ++    +FY   +FK+  +A  PKTWD+F    KKL+  GI P+A    +AW L
Sbjct: 133 YSVPT-VYYSWGMFYRKDLFKKVGIAGEPKTWDEFLDACKKLKAAGIAPIAVGGRDAWTL 191

Query: 217 ATLFENIALAESGPAYYRRLFVEMSPAAYLDARMLHILKRLRSLASAMPQPVRERPWTEV 276
           A  F+ + L  +G A++++L       AY DAR+  +    +SL       +  + + + 
Sbjct: 192 AGWFDYLDLRINGNAFHQQLMA--GDIAYTDARVKKVHTAWKSL-------IDNKYFIDN 242

Query: 277 ARS---------VVSGEAAMLIMGDW-AKG 296
           A S         +  G+AAM++MG + AKG
Sbjct: 243 ALSYDLDGAQPFLFQGKAAMMLMGTFIAKG 272


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,371,564
Number of extensions: 56224
Number of successful extensions: 192
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 2
Length of query: 445
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 357
Effective length of database: 1,203,190
Effective search space: 429538830
Effective search space used: 429538830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)