BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0410.p
         (435 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313832|ref|YP_003777924.1| sugar ABC transporter periplasm...   844   0.0  

>gi|300313832|ref|YP_003777924.1| sugar ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 439

 Score =  844 bits (2180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/438 (95%), Positives = 426/438 (97%), Gaps = 3/438 (0%)

Query: 1   MQTEQKAGRFSL---IPSLPSFPRRRLLAACALAFGLTGLAAAPGQAGTLTIESWRVDDL 57
           MQTEQKAG FSL   +P+LP+FPRR LLAACALA  L  LAAAP QAGTLTIESWRVDDL
Sbjct: 2   MQTEQKAGGFSLFSALPALPAFPRRPLLAACALALSLGSLAAAPSQAGTLTIESWRVDDL 61

Query: 58  PLWQEVLIPAFQRSNPGITVKFSPTAPTEYDSSLAARMAGGTAGDLVACRPFDVSLSLYN 117
           PLWQEVLIPAFQRSNPGITVKFSPTAPTEYDSSLAARMAGGTAGDLVACRPFDVSLSLYN
Sbjct: 62  PLWQEVLIPAFQRSNPGITVKFSPTAPTEYDSSLAARMAGGTAGDLVACRPFDVSLSLYN 121

Query: 118 KGHLEKLDGKPGMEFFAPAAKAAWQTDDGKDTFCMPMASVIHGFFYNTKIFKELNLEPPK 177
           KGHLEKLDGKPGMEFFAPAAKAAWQTDDG+DTFCMPMASVIHGFFYNTKIFKELNLEPPK
Sbjct: 122 KGHLEKLDGKPGMEFFAPAAKAAWQTDDGRDTFCMPMASVIHGFFYNTKIFKELNLEPPK 181

Query: 178 TEAEFFKLLDTVKANGKYAPLAMGTSEQWESHQVLFTSIGPNYWKGEEGRKALIAGKAKF 237
           TEAEFFKLLDTVKANGKYAPL MGT+EQWESHQVLFTSIGPNYWKGEEGRKALIAGKAKF
Sbjct: 182 TEAEFFKLLDTVKANGKYAPLVMGTAEQWESHQVLFTSIGPNYWKGEEGRKALIAGKAKF 241

Query: 238 TDPQFVAAWEYEAKLGKYLPKGASAQTYSDSQNMFALGKGAVYPAGSWDIAYFNGKMDFA 297
           TDPQFVAAW YEAKLGKYLPKGASAQTYSDSQNMFALGKGAVYPAGSWDIAYFNGKMDFA
Sbjct: 242 TDPQFVAAWNYEAKLGKYLPKGASAQTYSDSQNMFALGKGAVYPAGSWDIAYFNGKMDFA 301

Query: 298 AFPPPVPKNGDACYISDHNDIGMGINKKSKNKDDAYKFLAWLGSQEFADLYTNKVTGFFS 357
           AFPPPVPKNGDACYISDHNDIGMGINKKSKNK+DAYKFLAWLGSQEFADLYTNKVTGFFS
Sbjct: 302 AFPPPVPKNGDACYISDHNDIGMGINKKSKNKEDAYKFLAWLGSQEFADLYTNKVTGFFS 361

Query: 358 LSNHLISVKDPIAKQMMGWRKNCASTIRVNSQILNRGTPSMENEMWNVNAQVLNGKMSPQ 417
           LSNHLISVKDPIAKQMMGWRKNCASTIRVNSQILNRGTPSMENEMWNVNAQVLNGKM+PQ
Sbjct: 362 LSNHLISVKDPIAKQMMGWRKNCASTIRVNSQILNRGTPSMENEMWNVNAQVLNGKMTPQ 421

Query: 418 DAAAKIQAGFAKWYKPQQ 435
           DAAAKIQ+GFAKWYKPQQ
Sbjct: 422 DAAAKIQSGFAKWYKPQQ 439


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,398,728
Number of extensions: 56806
Number of successful extensions: 153
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 347
Effective length of database: 1,203,190
Effective search space: 417506930
Effective search space used: 417506930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)