BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0406.p (377 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 723 0.0 gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [H... 401 e-113 gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transp... 365 e-102 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 350 9e-98 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 347 1e-96 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/373 (96%), Positives = 367/373 (98%) Query: 1 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE 60 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE Sbjct: 1 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE 60 Query: 61 LAIGGEVVNHLPPAQRGIAMVFQSYALYPHMNVYKNMAFGLKVAGSSKSDIDARIRHAAS 120 LAIGG+VVNHLPPA+RGIAMVFQSYALYPHMNVYKNMAFGLKVAG+SKSDIDARIRHAA+ Sbjct: 61 LAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAA 120 Query: 121 ILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKL 180 ILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKL Sbjct: 121 ILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKL 180 Query: 181 HRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGSPKM 240 HRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGSPKM Sbjct: 181 HRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGSPKM 240 Query: 241 NFFPGVVTRCDDSGVQVEIAGGLRLLADVDPQGVSPGAAVTLGLRAEQIREGLGDGQPLR 300 NFF GVVTRCDDSGVQVEIAGGLRLLADVDP GV+PGAAVTLGLRAEQIREGLGDGQPL Sbjct: 241 NFFQGVVTRCDDSGVQVEIAGGLRLLADVDPLGVTPGAAVTLGLRAEQIREGLGDGQPLH 300 Query: 301 GVVNLVEHLGEANFLYVTLEGGHDIVVRGDGNRSVHIGELIALSVHSHAFHLFDAQGQAL 360 GVVNLVEHLGEANFLYVTL+GGHDIVVRGDGNR+V IG+ IALSVHSHAFHLFDAQGQAL Sbjct: 301 GVVNLVEHLGEANFLYVTLDGGHDIVVRGDGNRNVDIGQPIALSVHSHAFHLFDAQGQAL 360 Query: 361 RRRNPGNLQAARR 373 RRR PGNLQAARR Sbjct: 361 RRRTPGNLQAARR 373 >gi|300309785|ref|YP_003773877.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 372 Score = 401 bits (1030), Expect = e-113, Method: Compositional matrix adjust. Identities = 209/363 (57%), Positives = 255/363 (70%), Gaps = 3/363 (0%) Query: 1 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE 60 MA V+I+ L K YD +V+ +NL+I DGEF V VGPSGCGKSTLLRM+ GLEEIS G+ Sbjct: 1 MAAVSIRNLAKRYDDN-EVMRDINLEIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGD 59 Query: 61 LAIGGEVVNHLPPAQRGIAMVFQSYALYPHMNVYKNMAFGLKVAGSSKSDIDARIRHAAS 120 L IG +N +P ++RG+AMVFQSYALYPHM++Y NMAFGLK+AG SK++IDA ++HAA Sbjct: 60 LDIGARRMNEVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAK 119 Query: 121 ILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKL 180 IL IDHLL R PR LSGGQRQRVAIGRAI RQP +FLFDEPLSNLDAALRV+ RLE AKL Sbjct: 120 ILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKL 179 Query: 181 HRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGSPKM 240 H L T++YVTHDQ+EAMTL DKIVV+ EGRI+Q G+P +LY P N FVAGFIGSPKM Sbjct: 180 HDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKM 239 Query: 241 NFFPGVVTRCDDSGVQVEIAGGLRLLADVDPQGVSPGAAVTLGLRAEQIREGLGDGQPLR 300 NF G V GVQV++ GG A VD + G VTLG+R E + G L+ Sbjct: 240 NFIDGTVAAIQADGVQVQLPGGGLQWAAVDGSTLQVGQKVTLGVRPEHLNIAQGQAA-LQ 298 Query: 301 GVVNLVEHLGEANFLYVTLEGGHD-IVVRGDGNRSVHIGELIALSVHSHAFHLFDAQGQA 359 +E LG+ ++LY EG D +++R + G ++ L+ HLF A GQA Sbjct: 299 ARCTALELLGDFSYLYAAYEGSEDALILRVPDSLDAPHGSVLPLAADPARCHLFGADGQA 358 Query: 360 LRR 362 L R Sbjct: 359 LPR 361 >gi|300309616|ref|YP_003773708.1| maltose/maltodextrin ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 381 Score = 365 bits (937), Expect = e-102, Method: Compositional matrix adjust. Identities = 187/370 (50%), Positives = 252/370 (68%), Gaps = 8/370 (2%) Query: 1 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE 60 MA + ++ +K Y V+ ++LDI + EFCV +GPSGCGKSTLLR + GLE+++ G+ Sbjct: 1 MASITLRAAQKAYGDAPPVIRNVDLDIGEHEFCVFLGPSGCGKSTLLRSIAGLEDLTSGD 60 Query: 61 LAIGGEVVNHLPPAQRGIAMVFQSYALYPHMNVYKNMAFGLKVAGSSKSDIDARIRHAAS 120 L IGG+ VN +P AQR +AMVFQSYAL+PHM VY+NM+FGL +A K++I+ ++R AA Sbjct: 61 LFIGGKRVNDVPSAQRSVAMVFQSYALFPHMTVYENMSFGLTLAKLPKAEIEQKVREAAR 120 Query: 121 ILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKL 180 IL+++ LLQR P+ELSGGQRQRVAIGRAIVR+P +FLFDEPLSNLDA LR QTR+EIA+L Sbjct: 121 ILQLEELLQRKPKELSGGQRQRVAIGRAIVRRPGVFLFDEPLSNLDATLRSQTRIEIARL 180 Query: 181 HRQLA-ATIVYVTHDQVEAMTLGDKIVVMHE-------GRIQQAGTPLELYQQPQNLFVA 232 HRQ A++VYVTHDQVEAMTL D+IV++H G I Q GTP+ELY P+N FVA Sbjct: 181 HRQFEQASVVYVTHDQVEAMTLADRIVLLHAGADTQRFGSIAQVGTPMELYHHPRNRFVA 240 Query: 233 GFIGSPKMNFFPGVVTRCDDSGVQVEIAGGLRLLADVDPQGVSPGAAVTLGLRAEQIREG 292 GFIGSP+MNF P V ++G+ V ++G L + PG VT+G+R E + G Sbjct: 241 GFIGSPRMNFLPAQVAGVQENGILVRLSGSEETLLVAAQGALQPGQMVTVGVRPEHMEIG 300 Query: 293 LGDGQPLRGVVNLVEHLGEANFLYVTLEGGHDIVVRGDGNRSVHIGELIALSVHSHAFHL 352 + V LVE LGE ++++ G +V + G+ + GE + +++ +L Sbjct: 301 SQGQYGIHREVVLVERLGEQTYVHLDEPAGQPLVAKAAGDARITRGERVRVAIAPACAYL 360 Query: 353 FDAQGQALRR 362 FD G AL R Sbjct: 361 FDQDGLALTR 370 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 350 bits (899), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 192/360 (53%), Positives = 241/360 (66%), Gaps = 6/360 (1%) Query: 1 MAHVNIKQLRKTYDG---RADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEIS 57 MA +++KQ+RKTY DV+ G++ +I DGEF V+VGPSGCGKSTLLRM+ GLEEIS Sbjct: 1 MAAIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEIS 60 Query: 58 GGELAIGGEVVNHLPPAQRGIAMVFQSYALYPHMNVYKNMAFGLKVAGSSKSDIDARIRH 117 G++ IG VVN L P +R IAMVFQ+YALYPHM VY+NMA+GLK+ G SKS+IDAR++ Sbjct: 61 SGQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQR 120 Query: 118 AASILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEI 177 AA+IL++ LL+R PR+LSGGQRQRVA+GRAIVR+P +FLFDEPLSNLDA LRVQ RLEI Sbjct: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 Query: 178 AKLHRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGS 237 KLH L T +YVTHDQVEAMTLG +++VM+ G +Q GTP E+Y +P FVA FIGS Sbjct: 181 QKLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 Query: 238 PKMNFFPGVVTRCDDSGVQVEIAGGLRLLADVDPQGVSPGAAVTLGLRAEQIREGL-GDG 296 P MN G ++ D + +V +L P + G LG+R E + L G Sbjct: 241 PPMNLLQGKLS-ADGASFEVSKGNASDILRLPQPLTGAAGQERILGVRPEHLLPILDGSA 299 Query: 297 QPLRGVVNLVEHLGEANFLYVTLEGGHDIVVRGDGNRSVHIGELIALSVHSHAFHLFDAQ 356 L V LVE LG A L GG +V+R N V G+ I S + H FD + Sbjct: 300 AQLSLEVELVEALG-AELLVHARCGGQALVLRCPANVQVRTGQRIGASFGAGDVHWFDVK 358 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 347 bits (889), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 191/368 (51%), Positives = 245/368 (66%), Gaps = 12/368 (3%) Query: 1 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE 60 MA V I+ ++K + G ++ G+++DI DGEF VLVGPSGCGKSTLLRML GLEEI+GGE Sbjct: 1 MASVQIRAVKKQF-GSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGE 59 Query: 61 LAIGGEVVNHLPPAQRGIAMVFQSYALYPHMNVYKNMAFGLKVAGSSKSDIDARIRHAAS 120 + IGG VVN++ P R IAMVFQ+YALYPHM V NMAF L +A K+ +D R++ AA Sbjct: 60 ILIGGTVVNNVQPKDRDIAMVFQNYALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAAD 119 Query: 121 ILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKL 180 IL ++ LL R PR+LSGGQRQRVA+GRAIVR P++FLFDEPLSNLDA LRVQ R EI +L Sbjct: 120 ILGLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKEL 179 Query: 181 HRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGSPKM 240 H++L T +YVTHDQ+EAMT+ D+IVVM +G ++Q G PL+LY P NLFVAGFIGSP M Sbjct: 180 HQRLKTTSIYVTHDQIEAMTMADQIVVMRDGLVEQRGRPLDLYDYPANLFVAGFIGSPAM 239 Query: 241 NFFPGVVTRCDDSGVQVEIAGGLRLLADVDPQGVS----PGAAVTLGLRAEQIREGLGDG 296 NF P + R + +G +VE A G R+ A P G + G VT G+R E + G G Sbjct: 240 NFIPATLRR-NATGAEVEFADGTRVPA---PYGAALQGNDGQKVTYGVRPEHLSIGAA-G 294 Query: 297 QPLRGVVNLVEHLGEANFLYVTLEGGHDIVVRGDGNRSVHIGELIALSVHSHAFHLFDAQ 356 Q + V +VE G ++ G + G++I L HLFDA+ Sbjct: 295 QGIATKVIVVEPTGADTEVFSRF-GDTSLTSIFRERHDFGAGDVIHLVPDHSRTHLFDAE 353 Query: 357 -GQALRRR 363 G++L R Sbjct: 354 SGKSLAGR 361 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.140 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,241,958 Number of extensions: 55952 Number of successful extensions: 585 Number of sequences better than 1.0e-08: 132 Number of HSP's gapped: 361 Number of HSP's successfully gapped: 145 Length of query: 377 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 290 Effective length of database: 1,207,925 Effective search space: 350298250 Effective search space used: 350298250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)