BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0405.p
         (305 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313836|ref|YP_003777928.1| N-acetylglucosamine kinase [Her...   446   e-126

>gi|300313836|ref|YP_003777928.1| N-acetylglucosamine kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 308

 Score =  446 bits (1146), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/308 (83%), Positives = 278/308 (90%), Gaps = 3/308 (0%)

Query: 1   MDAIAYLLGIDGGGTKTLVRLTSPQGQVLAQASGPGSALRIGAAQAWRVISQTIEDAFSS 60
           MD IAYL+G+DGGGTKTLVRL S  G+ L QASGPGSALR GAA AWRVI +TIE +F++
Sbjct: 1   MDGIAYLVGVDGGGTKTLVRLASLHGKTLGQASGPGSALRNGAAHAWRVIGRTIEASFAA 60

Query: 61  AGLRRPADETLAVGIGIAGENVAQWAADFRAQAPAFGVLEIVNDGVATLLGAHGGAPGAI 120
           AGL+RPAD+ LAVGIGIAGENVAQW+ADFR  APAFG L+IVNDGVATLLGAHGGAPGAI
Sbjct: 61  AGLKRPADQALAVGIGIAGENVAQWSADFRTMAPAFGALDIVNDGVATLLGAHGGAPGAI 120

Query: 121 IAVGTGTIGLSLDLDGSRRVVDGWGFPSGDDGSGGWMGLRALHHAQLALDGRSHRGPLAD 180
           +AVGTGTIGL+LD+DGSRRVVDGWGFPSGDDGSGGWMGLRALHHAQLALDGRS RGPLAD
Sbjct: 121 VAVGTGTIGLALDIDGSRRVVDGWGFPSGDDGSGGWMGLRALHHAQLALDGRSPRGPLAD 180

Query: 181 AVLDLCRSELPA---EPARDERATLLDWLAQADQAAFARAARPVVAHAHDDVAARSILQA 237
           AVL LCR+ELPA   +PARDERATLLDWL+QADQAAFARAARPVVA A +D AAR+ILQA
Sbjct: 181 AVLALCRAELPAHPGQPARDERATLLDWLSQADQAAFARAARPVVAQAANDEAARAILQA 240

Query: 238 AAAEISRMIDTLDPAQCLPLALCGGLAAALQPYLERRQQARIVPPQADAVDGALLLVKRA 297
           AAAEIS MI TLDPAQ LPLALCGGLAAALQ YL+ RQQARIV PQADAVDGALLL +RA
Sbjct: 241 AAAEISLMIATLDPAQRLPLALCGGLAAALQAYLDPRQQARIVAPQADAVDGALLLAQRA 300

Query: 298 LQPKETPA 305
           LQ KETPA
Sbjct: 301 LQAKETPA 308


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 847,693
Number of extensions: 32586
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,217,395
Effective search space: 267826900
Effective search space used: 267826900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)