BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0403.p
         (340 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313838|ref|YP_003777930.1| glucosamine 6-phosphate synthas...   588   e-169
gi|300313709|ref|YP_003777801.1| L-glutamine:D-fructose-6-phosph...   115   6e-27

>gi|300313838|ref|YP_003777930.1| glucosamine 6-phosphate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score =  588 bits (1516), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 310/336 (92%), Positives = 326/336 (97%)

Query: 5   MLKEARSAADYVAVQLTRDQDRYAALGAQLRAAPPASIVTVARGSSDHAAAYCAYLIMAR 64
           MLKEARSAADYVAVQLTRDQDRYAALGA+LRAAPPA+IVTVARGSSDHAA YCAYLIMAR
Sbjct: 1   MLKEARSAADYVAVQLTRDQDRYAALGARLRAAPPANIVTVARGSSDHAATYCAYLIMAR 60

Query: 65  LGRIVASLPMSLVTLNRAPLQVRDALAIAISQSGQSPDVVEPIRYFHAQGASTVALVNQA 124
           LGRIVASLPMSLVTLN APLQVRDALAIA+SQSGQSPDVVEPIRYFHAQGA+TVALVNQA
Sbjct: 61  LGRIVASLPMSLVTLNHAPLQVRDALAIAVSQSGQSPDVVEPIRYFHAQGATTVALVNQA 120

Query: 125 ESPLAAAAQWSLPLHAGVEASVAATKSFIASLVAGALLTAHWQDDAALLDALAQLPQALR 184
           +SPLA+AAQWSLPLHAGVE+SVAATKSFIASLVA ALLTAHWQDDAALL+ALAQLP ALR
Sbjct: 121 DSPLASAAQWSLPLHAGVESSVAATKSFIASLVASALLTAHWQDDAALLNALAQLPDALR 180

Query: 185 AACECDWSAAVEALVPANRLMIVGRGIGFPLALEAALKYKETCAIQAEAFSGAEIKHGPM 244
           AAC CDWS AV+AL PA+R+M+VGRGIGFPLALEAALK KETCAIQAEAFSGAEIKHGP+
Sbjct: 181 AACACDWSDAVQALTPADRIMVVGRGIGFPLALEAALKCKETCAIQAEAFSGAEIKHGPI 240

Query: 245 ALIEDGYPLLMFATRGPSQAGMLALAAEMRARGARVLLAAPEDVIERDLTLPVAATPDLD 304
           ALIE+GYPLLMFA RGPSQAGMLALAAEMR RGA+VLLAAPEDV+ERDLTLPVAATPDLD
Sbjct: 241 ALIEEGYPLLMFAIRGPSQAGMLALAAEMRVRGAKVLLAAPEDVVERDLTLPVAATPDLD 300

Query: 305 PIVAIQAFYVMAAQLSAARGMDADRPRHLNKVTKTN 340
           PIVAIQAFYVMAAQLSAARGMDADRPRHLNKVTKTN
Sbjct: 301 PIVAIQAFYVMAAQLSAARGMDADRPRHLNKVTKTN 336


>gi|300313709|ref|YP_003777801.1| L-glutamine:D-fructose-6-phosphate
           aminotransferase [Herbaspirillum seropedicae SmR1]
          Length = 605

 Score =  115 bits (288), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 157/314 (50%), Gaps = 22/314 (7%)

Query: 41  SIVTVARGSSDHAAAYCAYLIMARLGRIVASLPMSLVTLNRAPLQVRDALAIAISQSGQS 100
           SI+ +A G+S +A     Y + + + +I  ++ ++     R  +    +L + ISQSG++
Sbjct: 290 SILILACGTSYYAGLTAKYWLES-IAKIPVNVEIASEYRYRDSVPNPKSLVVTISQSGET 348

Query: 101 PDVVEPIRYFHAQG-ASTVALVNQAESPLAAAAQWSLPLHAGVEASVAATKSFIASLVAG 159
            D +  +++  + G   T+ + N A S +    + +    AGVE  VA+TK+F   L A 
Sbjct: 349 ADTLAALKHARSLGMQHTLTICNVATSAMVRECELAYITRAGVEVGVASTKAFTTQLAAL 408

Query: 160 -----------ALLTAHWQDDAALLDALAQLPQALRA--ACECDWSAAVEALVPANRLMI 206
                       LLT   + +A  L A+  LP AL++  A E    A  E+       + 
Sbjct: 409 FLLTLALAQTRGLLTE--EQEAEHLKAMRHLPAALQSVLALEPSIVAWAESFARRENALF 466

Query: 207 VGRGIGFPLALEAALKYKETCAIQAEAFSGAEIKHGPMALIEDGYPLLMFATRGPSQAGM 266
           +GRG+ +P+ALE ALK KE   I AEA++  E+KHGP+AL+ D  P++  A        +
Sbjct: 467 LGRGLHYPIALEGALKLKEITYIHAEAYAAGELKHGPLALVTDQMPVVTIAPNDALVEKL 526

Query: 267 LALAAEMRARGARVLLAAPEDV-IERDLTLPVAATPD----LDPIVAIQAFYVMAAQLSA 321
            +   E+RARG ++ + A  D  I     L V   P+    L PI+ +    +++   + 
Sbjct: 527 KSNMQEVRARGGQLYVFADGDSHISSAEGLHVIRMPEHYGVLSPILHVVPLQLLSYHTAL 586

Query: 322 ARGMDADRPRHLNK 335
           ARG D D+PR+L K
Sbjct: 587 ARGTDVDKPRNLAK 600


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.130    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 965,936
Number of extensions: 38593
Number of successful extensions: 182
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 179
Number of HSP's successfully gapped: 2
Length of query: 340
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 254
Effective length of database: 1,212,660
Effective search space: 308015640
Effective search space used: 308015640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)