BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0402.p (295 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313839|ref|YP_003777931.1| MetE/MetH family transcription ... 585 e-168 gi|300312961|ref|YP_003777053.1| transcription regulator protein... 84 1e-17 gi|300313102|ref|YP_003777194.1| LysR family transcription regul... 83 3e-17 gi|300312750|ref|YP_003776842.1| LysR family transcription regul... 82 4e-17 gi|300310987|ref|YP_003775079.1| cys regulon transcription regul... 82 5e-17 >gi|300313839|ref|YP_003777931.1| MetE/MetH family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 295 Score = 585 bits (1509), Expect = e-168, Method: Compositional matrix adjust. Identities = 286/295 (96%), Positives = 292/295 (98%) Query: 1 MLDRIHLSIVQEVERQGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLRLTQ 60 MLDRIHLSIVQEVERQGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLRLTQ Sbjct: 1 MLDRIHLSIVQEVERQGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLRLTQ 60 Query: 61 AGQYLLAVANRVLPQLNLAEERLRQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPD 120 AGQYLLAVANRVLPQL+LAEERLRQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPD Sbjct: 61 AGQYLLAVANRVLPQLSLAEERLRQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPD 120 Query: 121 VDVDVKQKFQFGGIGALFGYEIDLLVTPDPLDKPGLVFEPVFDYEQVLVVAADHPLAGAD 180 VDVDVKQKFQFGGIGALFGYEIDLLVTPDPLDKPGLVFEPVFDYEQVLVVA+DHPLA D Sbjct: 121 VDVDVKQKFQFGGIGALFGYEIDLLVTPDPLDKPGLVFEPVFDYEQVLVVASDHPLADVD 180 Query: 181 YVKPKQLNNEVLVTYPVPVDRLDIYTQFLTPAGIVPRRHKTIETTDIMLQMVASGRGVAA 240 YVKP+QL+NEVLVTYPVPVDRLDIYTQFL PAGIVPRRHKTIETTDIMLQMVASGRGVAA Sbjct: 181 YVKPRQLSNEVLVTYPVPVDRLDIYTQFLAPAGIVPRRHKTIETTDIMLQMVASGRGVAA 240 Query: 241 LPRWLVLEYAEQMEIVPVRLGKQGIAKHIYLGARESDVEIDYLRAFIEEARQAQA 295 LPRWLVLEYAEQME+VPVRLGKQGIAKHIYLGARESDVEIDYLRAFI+EARQAQA Sbjct: 241 LPRWLVLEYAEQMEVVPVRLGKQGIAKHIYLGARESDVEIDYLRAFIDEARQAQA 295 >gi|300312961|ref|YP_003777053.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 84.0 bits (206), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 71/278 (25%), Positives = 122/278 (43%), Gaps = 12/278 (4%) Query: 6 HLSIVQEVERQGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLRLTQAGQYL 65 HL V S + AA +LH+ Q LS +++LE+ LG ++ R R + LT AG++ Sbjct: 5 HLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMAGKFF 64 Query: 66 LAVANRVLPQLNLAEERLRQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPDVDVDV 125 +VL +L EE R A+G + IG Y L +++ + P++++ Sbjct: 65 YEQTLQVLSRLEQIEEGTRVIARGRQHWFNIGFVPSALYGLLPEMIKRFRTEMPEIEIGF 124 Query: 126 KQKFQFGGIGALFGYEIDLLVTPDPLDKPGLVFEPVFDYEQVLVVAADHPLAGADYVKPK 185 + + AL ID+ P+ P +V E + + V V HPL + V Sbjct: 125 SEIVTMEQVEALKSGRIDVGFGRLPISDPDIVCETIVEEPLVAVFPLGHPLLARNKVTLA 184 Query: 186 QLNNEVLVTYPVP-----VDR-LDIYTQFLTPAGIVPRRHKTIETTDIMLQMVASGRGVA 239 QL + + YP D+ LDI++ IV K + +VA+G GV Sbjct: 185 QLAAQRFILYPARPRPSYADQVLDIFSSRALRPSIV----KEANEMQTAIGLVAAGVGVT 240 Query: 240 ALPRWLVLEYAEQMEIVPVRLGKQGIAKHIYLGARESD 277 +PR ++ + ++V L +G+ + + R +D Sbjct: 241 LVPRS--VQGLHRSDVVYRPLSNKGVHSPVIMNFRAND 276 >gi|300313102|ref|YP_003777194.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 82.8 bits (203), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/245 (25%), Positives = 109/245 (44%), Gaps = 4/245 (1%) Query: 1 MLDRIHLSIVQEVERQGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLRLTQ 60 M++ HL+ + V AA +LH++Q L+ + LE++LG ++ R R ++LT Sbjct: 1 MIELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTA 60 Query: 61 AGQYLLAVANRVLPQLNLAEERLRQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPD 120 AG+Y + L A+ + + G+ GAL++G Y L V Y AA+P+ Sbjct: 61 AGKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPE 120 Query: 121 VDVDVKQKFQFGGIGALFGYEIDLLVTPDPLDKPGLVFEPVFDYEQVLVVAADHPLAGAD 180 VD+ + + + +ID+ + P D L ++ + V+ DH LAG Sbjct: 121 VDMRLTEYVPNLLATDIEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRDHRLAGRQ 180 Query: 181 YVKPKQLNNEVLVTYP---VPVDRLDIYTQFLTPAGIVPRRHKTIETTDIMLQMVASGRG 237 + +L + ++ P PV D+ Q G PR ++ +V G G Sbjct: 181 SISAAELAEDAFISIPRMIAPV-VYDLIQQHCQLHGFRPRIVLETNLQQTIVNLVGEGLG 239 Query: 238 VAALP 242 VA +P Sbjct: 240 VALVP 244 >gi|300312750|ref|YP_003776842.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 322 Score = 82.4 bits (202), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 111/246 (45%), Gaps = 7/246 (2%) Query: 13 VERQGSLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLRLTQAGQYLLAVANRV 72 V +G LT AA + + Q LS ++ LE++LG ++ R R + LT +G LL A + Sbjct: 30 VAEEGHLTKAAERIGIQQPPLSQQIRVLERELGVTLFNRLPRGMELTDSGAALLIDARAL 89 Query: 73 LPQLNLAEERLRQFAQGERGALRIGM-ECHPCYQWLLKVVSPYLAAWPDVDVDVKQKFQF 131 L QL+ +R+ AQG+ G + +G E + ++ V+ + A PDV + V++ Sbjct: 90 LAQLDTTVASVRRIAQGKMGRIAVGFTESASLHPFVHSVIRAFRADAPDVAMTVEESNTN 149 Query: 132 GGIGALFGYEIDLLVTPDPL-DKPGLVFEPVFDYEQVLVVAADHPLAGADYVKPKQLN-- 188 I AL G +DL P+ D GL E + + + V + DHPL K L+ Sbjct: 150 ELIEALRGKRLDLAFVRSPVGDSGGLTIETMLEEDMVAALPIDHPLVDGGKRKSIALHAL 209 Query: 189 ---NEVLVTYPVPVDRLDIYTQFLTPAGIVPRRHKTIETTDIMLQMVASGRGVAALPRWL 245 + ++ P D AG P+ + L +VA+G GV +P + Sbjct: 210 AEESFIMTRRPNGPGLYDTIIAACHAAGFSPQVIQEARKNLSTLSLVAAGVGVTVIPASM 269 Query: 246 VLEYAE 251 AE Sbjct: 270 TRVNAE 275 >gi|300310987|ref|YP_003775079.1| cys regulon transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 82.0 bits (201), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 78/294 (26%), Positives = 135/294 (45%), Gaps = 6/294 (2%) Query: 6 HLSIVQEVERQG-SLTAAAGVLHVTQSALSHSMKKLEQQLGTDIWLREGRHLR-LTQAGQ 63 L ++E R G +LT A VL +Q +S +++LE++LG +I+ R G+ L LT+ G+ Sbjct: 5 QLRSIREAARCGFNLTEVANVLFTSQPGVSRQIRELEEELGVEIFERNGKRLTGLTEPGK 64 Query: 64 YLLAVANRVLPQLNLAEERLRQFAQGERGALRIGMECHPCYQWLLKVVSPYLAAWPDVDV 123 +L + R+L + +++A + G L I L +VV + A+P V + Sbjct: 65 GILGIVERLLLEAENLRRASKEYAGEQSGTLSIATTHTQARYVLPRVVQAFRDAFPQVRI 124 Query: 124 DVKQKFQFGGIGALFGYEIDLLVTPDPLDK-PGLVFEPVFDYEQVLVVAADHPLAGADYV 182 ++Q + + D+ + + L + LV P + + V+VV HPL G + V Sbjct: 125 ALQQSAPEHIAEWVISGKADIGIATEGLSQFKELVSFPCYTWSHVIVVPKGHPLLGLEQV 184 Query: 183 KPKQLNNEVLVTYPVPVDRLDIYTQFLTPAGIVPRRHKTIETTDIMLQMVASGRGVAALP 242 + L L+TY V + AGI P T +D++ Q V+ G GV + Sbjct: 185 SLEDLGTWPLITYDVGFTGRGHIDEAFRQAGIEPDIVLTAMDSDVIQQYVSLGMGVGLVA 244 Query: 243 RWLVLE--YAEQMEIVPVRLGKQGIAK-HIYLGARESDVEIDYLRAFIEEARQA 293 V + + E + I L K IA+ + GA D+++ F E ++A Sbjct: 245 SMAVDQGKHQEMVAINASHLFKANIARLAVRRGAYLRGYAFDFIQQFAPELKRA 298 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 966,947 Number of extensions: 43153 Number of successful extensions: 237 Number of sequences better than 1.0e-08: 39 Number of HSP's gapped: 223 Number of HSP's successfully gapped: 39 Length of query: 295 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 210 Effective length of database: 1,217,395 Effective search space: 255652950 Effective search space used: 255652950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)