BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0400.p
         (559 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313840|ref|YP_003777932.1| hypothetical protein Hsero_4558...   568   e-163
gi|300312223|ref|YP_003776315.1| hypothetical protein Hsero_2918...   128   1e-30

>gi|300313840|ref|YP_003777932.1| hypothetical protein Hsero_4558
           [Herbaspirillum seropedicae SmR1]
          Length = 555

 Score =  568 bits (1464), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 366/594 (61%), Positives = 404/594 (68%), Gaps = 74/594 (12%)

Query: 1   MTTRNRSSAIIVSASLLGAVLALSACQKQDAVPPTAAAAPAAPTTPPYTPPTA---EQLS 57
           MTTRNRSSAIIVSASLLGAVLALSACQKQDA PPTAA AP APT     P T    EQLS
Sbjct: 1   MTTRNRSSAIIVSASLLGAVLALSACQKQDAPPPTAAGAPTAPTAAATPPYTPPTAEQLS 60

Query: 58  QMVAPIALFPDKLVAQVLAGATYPDQIVAANQWLGQNGALKGDILQAAEDKEPWDVSVKS 117
           QMVAPIALFPDKLVAQVLAGATYPDQ+VAANQWLGQN ALKGDILQAAEDK+PWDVSVKS
Sbjct: 61  QMVAPIALFPDKLVAQVLAGATYPDQVVAANQWLGQNSALKGDILQAAEDKQPWDVSVKS 120

Query: 118 LTMFPAVLSQMAANPDWTRSLGDAFVNDPNDVMNAIQALRLRAQQAGNLKSSSQLKVVST 177
           LTMFPAVLSQMAANPDWTR+LGDAFVNDPNDVMNAIQALRL+AQQAG+LKSS QL+V +T
Sbjct: 121 LTMFPAVLSQMAANPDWTRALGDAFVNDPNDVMNAIQALRLKAQQAGHLKSSPQLRVSTT 180

Query: 178 VRSSDTVRVEDAPAPRTVYAGAPVIPPPPQTIVIESSQPDTVYVPAYNPAVVYGPPVPVY 237
            RS+ TVR E    P+ VYAGAPVI PPPQTIVIESSQPDTVYVP Y+PAVVYG PVPVY
Sbjct: 181 ERSTSTVRYE---TPQPVYAGAPVIAPPPQTIVIESSQPDTVYVPRYDPAVVYGAPVPVY 237

Query: 238 PGYAYRPPSPVANEVVVGALSFGVGVFVGEAISHHSDWGWHDWGMHWGGGGGGDRPSGDW 297
           PGY YRPPS VA+EVVVGALSFGVGVFVGEAISHHSDWGWHDWGMHWGG    D      
Sbjct: 238 PGYVYRPPSHVADEVVVGALSFGVGVFVGEAISHHSDWGWHDWGMHWGGPVQQD------ 291

Query: 298 QRPAVVYKNTTYVSHSTTVI--------NRVTNNNVTVNNTRVVNNNVNNVSNVSNVNNV 349
            +PAVVYKNT+YVSHSTTVI            N  V   +     +NVNNV+N  NV N 
Sbjct: 292 -QPAVVYKNTSYVSHSTTVINRVTNNVIVNNNNRTVNNISNVNNVSNVNNVNNTRNVVNE 350

Query: 350 RNVDER-NVNNQTRIDNRRE--QVAPAAMSMPHFTASDARPGAMPSLRTQETQQKMALAN 406
             VD R  VNN   +D RRE  Q APAAMSMPHFTASDAR GA P        Q+MA  +
Sbjct: 351 NRVDRRVTVNN---VDQRREAVQAAPAAMSMPHFTASDARMGATPHA---PAPQQMAALH 404

Query: 407 LHAQPQAQKEAVQATGARPHQEAPQQAQHEQQEQLQQQQQEQRAQKEQQAAHEREQAQQN 466
            H  P A + A     AR   E  + A+  +   +QQ Q+E                   
Sbjct: 405 EHVAPAAPEHASAQHDARVMAEEKKMAEERKMPPMQQMQKE------------------- 445

Query: 467 AAQQARQQAEERKAQAMKQENLHPQMQAHAAAAP-REERPPQHEQKAAPERHEAAP---- 521
           AA+ A  + E ++A A    ++ P + AHA  AP REE+       A+ ++HEA      
Sbjct: 446 AAKPAMTRMENKEAPA---AHMTPPV-AHAQPAPQREEKMSMPTHAASMQQHEAQAHAPA 501

Query: 522 -----------HAQEAHAQAKHEPAKHEEDKRANDKHEGEKHEGEK-----HNG 559
                      H  E H   +H+  KHEE K A DKHE EKHEGEK     HNG
Sbjct: 502 PHPPAQHAAEAHEVEKHEAQQHQAEKHEEQKHAADKHEAEKHEGEKREAQHHNG 555


>gi|300312223|ref|YP_003776315.1| hypothetical protein Hsero_2918
           [Herbaspirillum seropedicae SmR1]
          Length = 511

 Score =  128 bits (321), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 114/224 (50%), Gaps = 40/224 (17%)

Query: 8   SAIIVSASLLGAVLALSACQKQDAVPPTAAAAPAAPTTPPYTPPTAEQLSQMVAPIALFP 67
           S +  +A L+ ++++    Q Q A PP  A              T +QL QM+AP+AL+P
Sbjct: 4   STLAWAACLVFSLVSGMPAQAQSAYPPAPAVY------------TQQQLDQMLAPVALYP 51

Query: 68  DKLVAQVLAGATYPDQIVAANQWLGQNGALKGDILQAAEDKEPWDVSVKSLTMFPAVLSQ 127
           D L+AQVL  +TYP ++V A +++     L+GD L  A    PWD SVK+L  FP+VL+ 
Sbjct: 52  DSLLAQVLMASTYPLEVVQAQRFIEARPGLQGDGLARAVAPMPWDPSVKALVQFPSVLAM 111

Query: 128 MAANPDWTRSLGDAFVNDPNDVMNAIQALRLRAQQAGNLKSSSQLKVVSTVRSSDTVRVE 187
           M    DW + LG AF+     VM+ +Q LR RA+ AG L+SS Q +VV          V+
Sbjct: 112 MNDRLDWMQQLGQAFLGQQPAVMDTVQNLRERARIAGTLESSPQQRVV----------VQ 161

Query: 188 DAPAPRTVYAGAPVIPPPPQTIVIESSQPDTVYVPAYNPAVVYG 231
           D                    I I    P  VYVP YNP VVYG
Sbjct: 162 D------------------DFIEIVPVNPQVVYVPYYNPVVVYG 187


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.310    0.123    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 701,417
Number of extensions: 17991
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 2
Length of query: 559
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 469
Effective length of database: 1,193,720
Effective search space: 559854680
Effective search space used: 559854680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 133 (55.8 bits)