BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0398.p
         (237 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313845|ref|YP_003777937.1| hypothetical protein Hsero_4563...   435   e-123
gi|300312640|ref|YP_003776732.1| hypothetical protein Hsero_3343...   186   2e-48
gi|300313760|ref|YP_003777852.1| hypothetical protein Hsero_4478...   160   6e-41

>gi|300313845|ref|YP_003777937.1| hypothetical protein Hsero_4563
           [Herbaspirillum seropedicae SmR1]
          Length = 237

 Score =  435 bits (1119), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/237 (94%), Positives = 231/237 (97%)

Query: 1   MTTKFSPSRRAVLAATAAAVPLVSLPLLKQARADGLEGIELQHYKPVFFNAAQWLFILAA 60
           MT+KFSPSRRAVLAATAAAVPLVS+PLLK+A+ADGLEGIELQHYKPVFFN AQWLFILAA
Sbjct: 1   MTSKFSPSRRAVLAATAAAVPLVSIPLLKEAQADGLEGIELQHYKPVFFNPAQWLFILAA 60

Query: 61  CDRLIPAEGRGPGALETNVPVFIDQQLHAGLGSDIYQQGPHQTDAPATLGFQIPYAPQDV 120
           CDRLIPAEGRGPGALETNVPVFIDQQLHAGLGSDIYQQGPHQ DAPATLGFQIPYAPQDV
Sbjct: 61  CDRLIPAEGRGPGALETNVPVFIDQQLHAGLGSDIYQQGPHQPDAPATLGFQIPYAPQDV 120

Query: 121 YRIGIDLTQQISQQQHGKRFEQLDAKDKDALLTSLQKNAADFAALGEKAMKPSQFFGQLL 180
           YRIGI LTQQISQQQHGK FEQLDAKDKDALLT+LQKN  DFAALGEK+M+PSQFFGQLL
Sbjct: 121 YRIGITLTQQISQQQHGKPFEQLDAKDKDALLTALQKNGVDFAALGEKSMRPSQFFGQLL 180

Query: 181 GDTKNGYLADPMYGGNKDMKAWVAIGFPGARAAYTEWVDQHNVKYPLGPVSLSGKRA 237
           GDTKNGYLADPMYGGNKDMKAWVAIGFPGARAAYTEWVDQHNVKYPLGPVSLSGKRA
Sbjct: 181 GDTKNGYLADPMYGGNKDMKAWVAIGFPGARAAYTEWVDQHNVKYPLGPVSLSGKRA 237


>gi|300312640|ref|YP_003776732.1| hypothetical protein Hsero_3343
           [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score =  186 bits (472), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 103/244 (42%), Positives = 138/244 (56%), Gaps = 13/244 (5%)

Query: 1   MTTKFSPSRR---AVLAATAAAVPL---VSLPLLKQARADGLEGIELQHYKPVFFNAAQW 54
           M+    P RR    VLA   AA  L    ++ + + A AD  E  + + Y P +F AA+W
Sbjct: 1   MSQDKEPRRRFLRQVLAIVPAASTLGGATTVAVSQAAMADSSEPGKPRAYTPTYFTAAEW 60

Query: 55  LFILAACDRLIPAEGRGPGALETNVPVFIDQQLHA--GLGSDIYQQGPHQTDAPATLGFQ 112
            F+ AA D LIP++  G GALET VP FID+Q+    G G   Y QGP   D+   LG+Q
Sbjct: 61  AFLNAAVDHLIPSDQYGAGALETGVPEFIDRQMETPYGAGKLWYMQGPFHPDSVPELGYQ 120

Query: 113 IPYAPQDVYRIGIDLTQQISQQQHGKRFEQLDAKDKDALLTSLQKNAADFAALGEKAMKP 172
           +   P+D+YR GI        + HGK F +LD   +  +L  +      F  +  K    
Sbjct: 121 LSLVPRDIYRQGIAACNDWCSKNHGKVFAELDKAKQLEVLKMMDGGKISFETVPAKT--- 177

Query: 173 SQFFGQLLGDTKNGYLADPMYGGNKDMKAWVAIGFPGARAAYTEWVDQHNVKYPLGPVSL 232
             FF  +LG+TK GY ADPMYGGN+ M  W  +GFPGARA + +WVDQ+NVKYP GPVS+
Sbjct: 178 --FFNFMLGNTKEGYFADPMYGGNQKMGGWKMVGFPGARADFADWVDQYNVKYPYGPVSI 235

Query: 233 SGKR 236
            G++
Sbjct: 236 LGEK 239


>gi|300313760|ref|YP_003777852.1| hypothetical protein Hsero_4478
           [Herbaspirillum seropedicae SmR1]
          Length = 235

 Score =  160 bits (406), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 87/229 (37%), Positives = 126/229 (55%), Gaps = 5/229 (2%)

Query: 6   SPSRRAVLAATAAAVPLVSLPLLKQARADGLEGIEL-QHYKPVFFNAAQWLFILAACDRL 64
           SP RR  L     A P+ +L +   +     EG    Q Y+P FFN  ++  + A  D L
Sbjct: 7   SPDRRRFLRGALTAAPVAALAVTAGSLTAKAEGPSPDQPYQPSFFNRDEFALLSALADTL 66

Query: 65  IPAEGRGPGALETNVPVFIDQQLHA--GLGSDIYQQGPHQTDAPATLGFQIPYAPQDVYR 122
           IPA+  GPGAL+  VP FID Q++   G G   Y QGP   DAP   G+Q+PY P+++Y+
Sbjct: 67  IPADDTGPGALQAGVPEFIDAQMNTPYGQGQLWYMQGPFTPDAPPEFGYQLPYPPRELYK 126

Query: 123 IGIDLTQQISQQQHGKRFEQLDAKDKDALLTSLQKNAADFAALGEKAMKPSQFFGQLLGD 182
            G+       +QQ+G  + +L+ + ++ ++   +K   +  +L    + PS  F  LL +
Sbjct: 127 KGLAEFDAAIRQQYGHGYVELNTQQREKMMAEFEK--GEQGSLKMATIPPSALFNLLLQN 184

Query: 183 TKNGYLADPMYGGNKDMKAWVAIGFPGARAAYTEWVDQHNVKYPLGPVS 231
              GY  DP  GGN+ M +W  IGFPGARA Y +WVDQ+   YPL P+S
Sbjct: 185 VHEGYFCDPTDGGNRGMGSWKMIGFPGARADYYDWVDQYGKSYPLPPIS 233


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 762,297
Number of extensions: 33870
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 3
Length of query: 237
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 155
Effective length of database: 1,231,600
Effective search space: 190898000
Effective search space used: 190898000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)