BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0393.p
         (188 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbasp...   311   2e-86
gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Her...   149   1e-37
gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH...    60   1e-10

>gi|300313850|ref|YP_003777942.1| xenobiotic reductase A
           [Herbaspirillum seropedicae SmR1]
          Length = 362

 Score =  311 bits (797), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 148/165 (89%), Positives = 161/165 (97%)

Query: 1   MSALFTPFKLKDLNLRNRIAVPPMCQYMAVDGKANEWHLSHYASIARGGAGLVIVEATAV 60
           MSALF PFKLKD++LRNRIAVPPMCQYMAV+GK N+WHLSHYASIARGGAGLVIVEATAV
Sbjct: 1   MSALFQPFKLKDVSLRNRIAVPPMCQYMAVEGKVNDWHLSHYASIARGGAGLVIVEATAV 60

Query: 61  APEGRITPGCTGIWSDELAQAFVPVVQAIKAAGAVPGIQIGHAGRKASANRPWEGDDHMA 120
           +PEGRITPGCTGIWSD L QAFVPVVQAIKAAGAVPGIQIGHAGRKASANRPWEGDDH+A
Sbjct: 61  SPEGRITPGCTGIWSDALGQAFVPVVQAIKAAGAVPGIQIGHAGRKASANRPWEGDDHIA 120

Query: 121 ADDARGWDTIAPSAIAFGKGLPKVPKAMSLDDIARVRQNFVDAAI 165
           ADDARGWDT++PSAIA+G+GLPKVPKAMSLDDIARVRQ+FV+AA+
Sbjct: 121 ADDARGWDTLSPSAIAYGRGLPKVPKAMSLDDIARVRQDFVNAAV 165


>gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 372

 Score =  149 bits (376), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/159 (50%), Positives = 98/159 (61%), Gaps = 1/159 (0%)

Query: 2   SALFTPFKLKDLNLRNRIAVPPMCQYMAVDGKANEWHLSHYASIARGGAGLVIVEATAVA 61
           S LF+P  L+ + L NRIAV PMCQY A DG  N+WHL H  S A GGAGLV++EATAV 
Sbjct: 3   SHLFSPLPLRGVTLPNRIAVSPMCQYSAEDGFVNDWHLVHLGSRAVGGAGLVLMEATAVV 62

Query: 62  PEGRITPGCTGIWSDELAQAFVPVVQAIKAAGAVPGIQIGHAGRKASANRPWEGDDHMAA 121
            EGRI+    GIW DE       + + I+  GAVPGIQ+ HAGRK+S  RPW+G      
Sbjct: 63  AEGRISSADLGIWKDEHIAPLRRITRFIEQQGAVPGIQLAHAGRKSSILRPWDGPAGSVP 122

Query: 122 DDARGWDTIAPSAIAFGKGLPKVPKAMSLDDIARVRQNF 160
             A GW   APSA+ F  G    P+AMS++ I  + Q F
Sbjct: 123 PSAGGWTPQAPSALPFDDGY-STPQAMSVEQIGALVQAF 160


>gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH
           oxidase family protein [Herbaspirillum seropedicae SmR1]
          Length = 366

 Score = 59.7 bits (143), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 3/105 (2%)

Query: 2   SALFTPFKLKDLNLRNRIAVPPMCQYMAVDGKA-NEWHLSHYASIARGGAGLVIVEATAV 60
           S LF P +L  + L+NRI + P+ +  A  G   ++    +YA   R GAGL+I EAT +
Sbjct: 8   SDLFKPVQLGAVQLQNRIVMAPLTRSRAQAGDVPSDLAAEYYAQ--RAGAGLIIAEATQI 65

Query: 61  APEGRITPGCTGIWSDELAQAFVPVVQAIKAAGAVPGIQIGHAGR 105
           +PEG+      GI++D    A+  +  A+ A G    +Q+ H GR
Sbjct: 66  SPEGKGYAWTPGIYNDAHVAAWKKITDAVHAKGGRIFLQLWHVGR 110


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 644,312
Number of extensions: 27697
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 3
Length of query: 188
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,241,070
Effective search space: 134035560
Effective search space used: 134035560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)