BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0391.p
         (203 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313850|ref|YP_003777942.1| xenobiotic reductase A [Herbasp...   380   e-107
gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase [Her...   134   4e-33
gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH...    64   6e-12

>gi|300313850|ref|YP_003777942.1| xenobiotic reductase A
           [Herbaspirillum seropedicae SmR1]
          Length = 362

 Score =  380 bits (976), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/197 (92%), Positives = 191/197 (96%)

Query: 7   RHRDAGFEWLELHFAHGYLGQSFFSAHSNQRDDLYGGSVENRARFLLETLCAVREVWPEH 66
           R R+AGFEWLELHFAHGYLGQSFFSAH+NQRDDLYGGSVENRARFLLETL AVREVWPEH
Sbjct: 166 RAREAGFEWLELHFAHGYLGQSFFSAHANQRDDLYGGSVENRARFLLETLRAVREVWPEH 225

Query: 67  LALTVRFGVLEYDGRDEQTLVDSIGVVRQFKEIGMDMISVTIGFTIPEVQIPWGPAFLGP 126
           LALTVRFGVLEYDGRDE+TL++SIGVVRQFK+ GMDMISVTIGFTIPEVQIPWGPAFLGP
Sbjct: 226 LALTVRFGVLEYDGRDEETLMESIGVVRQFKDSGMDMISVTIGFTIPEVQIPWGPAFLGP 285

Query: 127 IAKRVREEAGVPVSSAWGFGTPELAERAVKEGQLDLVMVGRSHLANPHWTYQAAKELGVE 186
           IAKRVREEA VPVSSAWGFGTP LAE+AVK+GQLDLVMVGRSHL NPHWTYQAAKELGVE
Sbjct: 286 IAKRVREEAAVPVSSAWGFGTPALAEQAVKDGQLDLVMVGRSHLVNPHWTYQAAKELGVE 345

Query: 187 RPSWTLPAPYAHWLERY 203
           RPSWTLPAPYAHWLERY
Sbjct: 346 RPSWTLPAPYAHWLERY 362


>gi|300312734|ref|YP_003776826.1| NADH:flavin oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 372

 Score =  134 bits (338), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 77/174 (44%), Positives = 106/174 (60%), Gaps = 5/174 (2%)

Query: 12  GFEWLELHFAHGYLGQSFFSAHSNQRDDLYGGSVENRARFLLETLCAVREVWPEHLALTV 71
           GF+ +ELH AHGYLG  F S  SNQR D YGGS ENR RFLLE   A R VWPE L L V
Sbjct: 171 GFKVIELHGAHGYLGHQFLSPLSNQRSDEYGGSFENRIRFLLEITRATRAVWPEELPLLV 230

Query: 72  RFGVLEY-DGRDEQTLVDSIGVVRQFKEIGMDMISVTIGFTIPEVQIPWGPAFLGPIAKR 130
           R    ++ DG    T  +++ + ++ +E+G+D++ V+ G   P+  IP GP +    A R
Sbjct: 231 RLSATDWVDG--GWTPEETVTLSQRLRELGVDLVDVSSGGNAPKAVIPVGPGYQTSFAAR 288

Query: 131 VREEAGVPVSSAWGFGTPEL-AERAVKEGQLDLVMVGRSHLANPHWTYQAAKEL 183
           V+ EAG+  S A G  T  + AE  ++ GQ DLV++ R  L +P+W   AA++L
Sbjct: 289 VKAEAGI-ASGAVGMITDAIQAEHILRTGQADLVLLARELLRDPYWPLHAAQQL 341


>gi|300312411|ref|YP_003776503.1| NADH:flavin oxidoreductase/NADH
           oxidase family protein [Herbaspirillum seropedicae SmR1]
          Length = 366

 Score = 64.3 bits (155), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 82/169 (48%), Gaps = 17/169 (10%)

Query: 11  AGFEWLELHFAHGYLGQSFFSAHSNQRDDLYGGSVENRARFLLETLCAVREVWPEHLALT 70
           AGF+ +E+H A+GYL   F    +NQR D YGGS+ENRAR LLE + AV  V P      
Sbjct: 172 AGFDGVEIHAANGYLLDQFLRDKTNQRTDGYGGSIENRARLLLEVVQAVTSVVPSE---- 227

Query: 71  VRFGVLEYDGRDEQTLVDSIG------VVRQFKEIGMDMISVTIGFTIPEVQIPWGPAFL 124
            R G+          + DS        VV Q     +  + V  G T    ++P G  F 
Sbjct: 228 -RVGIRLSPISPANDIADSDPKALFSYVVEQLNRFKLVYLHVVEGATGGPREVPGG--FD 284

Query: 125 GPIAKRVREEAGVPVSSAWGFGTPELAERAVKEGQLDLVMVGRSHLANP 173
             + + + +  G+ +++  G+   ++A +A    + DLV  GR  +ANP
Sbjct: 285 LQVLRDLFK--GLYIANN-GYDL-DMALQARASNRADLVAFGRPWIANP 329


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 731,676
Number of extensions: 31164
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 3
Length of query: 203
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,236,335
Effective search space: 150832870
Effective search space used: 150832870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)