BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0387.p
         (346 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313855|ref|YP_003777947.1| hypothetical protein Hsero_4573...   506   e-144

>gi|300313855|ref|YP_003777947.1| hypothetical protein Hsero_4573
           [Herbaspirillum seropedicae SmR1]
          Length = 386

 Score =  506 bits (1302), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 270/345 (78%), Positives = 297/345 (86%), Gaps = 2/345 (0%)

Query: 1   MQPFIAHLCPPDGKVLDPFCGFGSTLVAAHSVGRAGIGIEIDGQRVALTRQRLQRLGADG 60
           MQPFIAHLCPP+G+VLDPFCGFGSTLVAAHS GRAGIGIE+DG RVALTRQRLQRL  + 
Sbjct: 39  MQPFIAHLCPPEGRVLDPFCGFGSTLVAAHSQGRAGIGIEVDGSRVALTRQRLQRLSPEA 98

Query: 61  --PPQQVLQGDATALAHSLPPVDLVLSNVPYFGCQWPDASDAAHAGQLYASQTYAGFLGM 118
             P QQ++ GDA  L   LPPVDLVLSN+PYFGC+WP+ + AA +GQLYA QTYAGFLGM
Sbjct: 99  AEPAQQLIHGDAITLLPQLPPVDLVLSNIPYFGCRWPEQATAAQSGQLYAMQTYAGFLGM 158

Query: 119 LERLLRALRDCLRPGGWLVLCAENLRVGEQFVPLAWDLARLMADRFRFVEERILVYDRAS 178
           LERLL  LR CLRPGGWLVLCAENLRVGE FVPLAWDLARLMADRF FVEERIL+YDRAS
Sbjct: 159 LERLLAGLRCCLRPGGWLVLCAENLRVGEHFVPLAWDLARLMADRFSFVEERILLYDRAS 218

Query: 179 TSETPGQLRSNRSHEYALIARHLPHAIDTEQTLAVLQALQLAHPGFVLYGSFARWLQDLP 238
               PGQ+RSNR+HEYAL+ARHLP  IDT QTLAVLQA+Q AHPGFV+YGSFARWLQ LP
Sbjct: 219 QPAAPGQMRSNRAHEYALLARHLPPPIDTAQTLAVLQAMQSAHPGFVVYGSFARWLQGLP 278

Query: 239 LPQAPADADLLLPDDPRLVAAVCHWLEQQGFALTCWGAPFSAAMAGPAAAVLPERHYLRA 298
           L  APADADLLLPDDP+L+ A+CHWLEQQGFALTCWGAPFSAAMA   AA+LP+RHYLRA
Sbjct: 279 LAHAPADADLLLPDDPQLLVALCHWLEQQGFALTCWGAPFSAAMAAAGAALLPQRHYLRA 338

Query: 299 VRLNRAGRQVRLDLCLRDAQHDVATVLPHAVFRHGLPLMPPALLQ 343
           VRL+R GR VRLDLCLRD +HD A +LP AV + GLPLMP  L+Q
Sbjct: 339 VRLDRDGRLVRLDLCLRDQRHDAAQLLPQAVMQAGLPLMPAELVQ 383


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,066,803
Number of extensions: 42942
Number of successful extensions: 182
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,212,660
Effective search space: 315291600
Effective search space used: 315291600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)