BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0386.p
         (442 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313856|ref|YP_003777948.1| hypothetical protein Hsero_4574...   630   0.0  

>gi|300313856|ref|YP_003777948.1| hypothetical protein Hsero_4574
           [Herbaspirillum seropedicae SmR1]
          Length = 380

 Score =  630 bits (1624), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/354 (86%), Positives = 326/354 (92%)

Query: 19  ALPDLMPAALQQLLENRLPRVIRREPDQDDARRWRRWEIGGRTVQIAQPVTFTPYASAQP 78
           ALP LMPA+LQ+ L+ RLPRVI+REPD+DDA RWR WE+GGRTVQIAQPVTFTPYASA+P
Sbjct: 4   ALPALMPASLQRRLQARLPRVIQREPDEDDASRWRHWELGGRTVQIAQPVTFTPYASARP 63

Query: 79  CSARCRFCSETLDDGGPHAAALRPGPQYGAQLRQALAALRGLPLSWSLSGLETTDDAGWM 138
           CSARCRFCSETL+DGGPHAAALRPG +Y AQLRQALAAL+GLPLSWSLSGLETTDDAGWM
Sbjct: 64  CSARCRFCSETLNDGGPHAAALRPGLRYSAQLRQALAALQGLPLSWSLSGLETTDDAGWM 123

Query: 139 LSMLDALQEHARQSPVQGSVLYTNGAGLATPRGAELVTRLQAFDLGWVELSRHHHEAQAN 198
           LSMLD LQEHAR SPVQGSVLYTNGAGL    GA LV RLQ F LGWVELSRHHHEA AN
Sbjct: 124 LSMLDVLQEHARHSPVQGSVLYTNGAGLVGSPGAALVARLQDFGLGWVELSRHHHEAAAN 183

Query: 199 QAIMRFRSGQAVATQAGIDATLTQLVPQLPVKLVCIVQQGGIDGVPALKAYLRWAQQRGV 258
           QAIMRFRSGQAVATQ G++  L QL PQLPVKLVCIVQQGGIDG+PALKAYLRWAQQ+GV
Sbjct: 184 QAIMRFRSGQAVATQEGVEGVLAQLAPQLPVKLVCIVQQGGIDGLPALKAYLRWAQQQGV 243

Query: 259 TAVILREFSQLGPQYRNNVTARYIGGARIDVAALLAACLADPELSAEAQPVHATSGYYFW 318
           TAVILREFSQLGPQYR+NVTARYIG ARIDVA LLAACLADPE SAEAQ +HATSGYYFW
Sbjct: 244 TAVILREFSQLGPQYRDNVTARYIGAARIDVAELLAACLADPEFSAEAQLMHATSGYYFW 303

Query: 319 NVVLHWRGMQLTFEASDYVRMHARHASGRIYKLVFHANGRLCGGWNPEQHVLLE 372
           NV+LHWRGMQLTFEASDY+RMH RHASGR+YKLVFHANGRLCGGWNP++HVLLE
Sbjct: 304 NVLLHWRGMQLTFEASDYLRMHQRHASGRVYKLVFHANGRLCGGWNPDEHVLLE 357


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,325,950
Number of extensions: 52123
Number of successful extensions: 174
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 354
Effective length of database: 1,203,190
Effective search space: 425929260
Effective search space used: 425929260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)