BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0384.p
         (446 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313858|ref|YP_003777950.1| NH(3)-dependent NAD(+) syntheta...   863   0.0  
gi|300311219|ref|YP_003775311.1| glutamine-dependent NAD synthet...    87   3e-18

>gi|300313858|ref|YP_003777950.1| NH(3)-dependent NAD(+) synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 565

 Score =  863 bits (2230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/446 (94%), Positives = 434/446 (97%)

Query: 1   VYGVFDDGRHFEAGPETACVLPVKGMRVGFLICEDGWNDDLRSYRVNPFEKLAQADAQLV 60
           VYGVFDDGRHFEAGPETACVLP+KGMRVGFLICEDGWNDDLRSYRVNPFEKLAQADAQLV
Sbjct: 120 VYGVFDDGRHFEAGPETACVLPLKGMRVGFLICEDGWNDDLRSYRVNPFEKLAQADAQLV 179

Query: 61  VSINASPSDVGKRSQRHALFQAACLRRQMALLYVNQVGGQDQLVYDGGSFAMSPLQGLAF 120
           VSINASPSDVGKRSQRHALFQAACLRRQMALLYVNQVGGQDQLVYDGGSFAMSPLQGLAF
Sbjct: 180 VSINASPSDVGKRSQRHALFQAACLRRQMALLYVNQVGGQDQLVYDGGSFAMSPLQGLAF 239

Query: 121 EAARLAEDFQVIAFESGRFLRSDGVGEPVRADQTLATPEFQRRQILLGLRDYARRCGFGK 180
           EAARLAEDFQV+AFE GRFLRSDGVG P   DQT+ATPEF RRQILLGLRDYARRCGFGK
Sbjct: 240 EAARLAEDFQVLAFEGGRFLRSDGVGAPQCIDQTMATPEFHRRQILLGLRDYARRCGFGK 299

Query: 181 VVVGCSGGIDSALTIALAVEALGAQNVVAVTMPSMFSSTGSVDDSETLCQALGVTLFRHP 240
           VVVG SGGIDSA+TIALA EALGAQNVVAVTMPS+FSS GSV DSETLCQALGVTLFRHP
Sbjct: 300 VVVGSSGGIDSAVTIALAAEALGAQNVVAVTMPSVFSSAGSVSDSETLCQALGVTLFRHP 359

Query: 241 ISDLVREFEDGFAKAFGAPLRGLPLENLQARVRGAILMEYSNGYDALLLTTGNKSEISVG 300
           I+DLVREFEDGFA AFGAPLRGLPLENLQARVRGAILMEYSNGYDALLLTTGNKSEISVG
Sbjct: 360 IADLVREFEDGFATAFGAPLRGLPLENLQARVRGAILMEYSNGYDALLLTTGNKSEISVG 419

Query: 301 YCTLYGDTNGGLGLIGDLYKTEVYALARHLNAQAGREIIPAAIIDKAPSAELAPDQRDTD 360
           YCTLYGDTNGGLGLIGDLYKTEVYALARHLNAQAGREIIPAAIIDKAPSAELAPDQRDTD
Sbjct: 420 YCTLYGDTNGGLGLIGDLYKTEVYALARHLNAQAGREIIPAAIIDKAPSAELAPDQRDTD 479

Query: 361 SLPPYEVLDEILKWHIEGSRLPADEARAASRAVEQLSGTETGAALVERICRMVARNEYKR 420
           SLPPYEVLDEILKWHIEGSRLPADEA+AA+R VEQLSGT+TGAALVERICRMVARNEYKR
Sbjct: 480 SLPPYEVLDEILKWHIEGSRLPADEAQAAARTVEQLSGTDTGAALVERICRMVARNEYKR 539

Query: 421 RQSPPVIRVRARAFGSGRQIPIAVRY 446
           RQSPPVIR+R+RAFGSGRQIPIAVRY
Sbjct: 540 RQSPPVIRLRSRAFGSGRQIPIAVRY 565


>gi|300311219|ref|YP_003775311.1| glutamine-dependent NAD synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 685

 Score = 87.0 bits (214), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 110/439 (25%), Positives = 176/439 (40%), Gaps = 79/439 (17%)

Query: 23  VKGMRVGFLICEDGWNDDLRSYRVNPFEKLAQADAQLVVSINASPSDVGKRSQRHALFQA 82
           +   R    ICED W        + P    A A A ++V+++AS   VGK   RH L   
Sbjct: 169 IPDFRFHIEICEDVW------VPIPPSSFAALAGATVLVNLSASNIVVGKSGYRHQLVSQ 222

Query: 83  ACLRRQMALLYVNQVGGQD--QLVYDGGSFAMSPLQGLAFEAARLAEDFQVIA------- 133
              R   A LY +   G+    L +DG +      + LA E+ R A+   VI        
Sbjct: 223 QSARCLAAYLYSSAGNGESTTDLAWDGQALICENGELLA-ESERFAQGGHVIYADVDLER 281

Query: 134 -----FESGRFLRS-----------DGVGEPVRADQTLATPEFQRR-----QILLGLRDY 172
                F    F +S           + VG  V+  Q  A P  QRR      +       
Sbjct: 282 LSRERFHQTTFGQSVRRHADEVRRFEVVGFEVQIPQQQALP-LQRRVARFPYVPANAEQR 340

Query: 173 ARRC------------------GFGKVVVGCSGGIDSA---LTIALAVEALGA--QNVVA 209
             RC                  G  KVV+G SGG+DS    L  A A++ LG    N++A
Sbjct: 341 ELRCREVYSIQVQALVQRLSSAGLKKVVIGVSGGLDSTHALLVCAKAMDKLGLPRSNILA 400

Query: 210 VTMPSMFSSTGSVDDSETLCQALGVTL----FRHPISDLVREFEDGFAKAFGAPLRGLPL 265
            TMP   +S+ ++  +  L   +G +      R     ++++    +++  G P+  +  
Sbjct: 401 YTMPGFATSSRTLVQAHQLMAQVGCSAQEIDIRPSCEQMLKDLGHPYSR--GEPVYDITF 458

Query: 266 ENLQARVRGAILMEYSNGYDALLLTTGNKSEISVGYCTL-YGDTNGGLGLIGDLYKTEVY 324
           EN+QA  R   L   +N + A+++ TG+ SE+++G+CT   GD      +   + KT + 
Sbjct: 459 ENVQAGERTNHLFRLANHHGAIVIGTGDLSELALGWCTYGVGDHMSHYNVNASVPKTLIT 518

Query: 325 ALARHLNAQAGREIIPAAIIDKAPSAELAPD-----------QRDTDSLPPYEVLDEILK 373
            + R +      E+    ++      E++P+           QR  D + PYE+ D  L 
Sbjct: 519 HMVRWVAESGSLELKQPEVLIHVLETEISPELVPGASDGEPGQRTQDFIGPYELQDFNLY 578

Query: 374 WHIEGSRLPADEARAASRA 392
           + +     PA  A  A  A
Sbjct: 579 YILRYGFTPAKVAFLAHSA 597


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,449,211
Number of extensions: 64047
Number of successful extensions: 201
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 2
Length of query: 446
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 358
Effective length of database: 1,203,190
Effective search space: 430742020
Effective search space used: 430742020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)