BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0382.p
         (400 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313859|ref|YP_003777951.1| nicotinic acid phosphoribosyltr...   766   0.0  
gi|300310958|ref|YP_003775050.1| nicotinate phosphoribosyltransf...   405   e-114

>gi|300313859|ref|YP_003777951.1| nicotinic acid
           phosphoribosyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 400

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/400 (92%), Positives = 381/400 (95%)

Query: 1   MAPVVRSLLETDLYKFTMWQALLHSHPGAQAEYTFVCRNQPQFPLAELKEEVERELDHLC 60
           MAPVVRSLLETDLYKFTMWQALLHSHPGAQAEYTFVCRNQP FPLAELKE+VERELDHLC
Sbjct: 1   MAPVVRSLLETDLYKFTMWQALLHSHPGAQAEYTFVCRNQPAFPLAELKEDVERELDHLC 60

Query: 61  SLRFSSDELAYLAQLRYMKSDFIDFLALFRFQRKFIEVSTEGERLCIVARGPQVHVMGFE 120
            LR   +EL YLAQLRYMKSDFIDFLALFRFQRKFIEVST+G+RLCIVARGPQVHVMGFE
Sbjct: 61  CLRLRPEELDYLAQLRYMKSDFIDFLALFRFQRKFIEVSTDGDRLCIVARGPQVHVMGFE 120

Query: 121 IFVLYIVNELYFRRIGTPAAGVEARRRLQDKLTLLHAFAAEAPGRHPFEFFDFGVRRRYS 180
           IFVLYIVNELYFRR+G   A  EARRRLQDK+ LL +FA+E  GRHPFEFFDFGVRRRYS
Sbjct: 121 IFVLYIVNELYFRRVGHAGALDEARRRLQDKIALLKSFASEPAGRHPFEFFDFGVRRRYS 180

Query: 181 GAWQEEVVATLAREVPQYFKGTSNVWLAKKYQLVPIGTMAHEYLQSYQSFGVRLRDFQKA 240
           GAWQEEVVATLAREVPQYFKG+SNVWLA +YQLVPIGTMAHEYLQSYQSFGVRLRDFQKA
Sbjct: 181 GAWQEEVVATLAREVPQYFKGSSNVWLAMQYQLVPIGTMAHEYLQSYQSFGVRLRDFQKA 240

Query: 241 ALEDWVQEYRGDLGVALTDVVGMDAFLADFDLYFAKLFDGLRHDSGDPFEWGEKALAHYR 300
           ALE WVQEYRGDLGVALTDVVGMDAFLADFDLYFAKLFDGLRHDSGDPFEWGEKALAHYR
Sbjct: 241 ALEAWVQEYRGDLGVALTDVVGMDAFLADFDLYFAKLFDGLRHDSGDPFEWGEKALAHYR 300

Query: 301 KLRLDANTKRLVFSDGLDLPQALRLYRHFSDRAMTGFGIGTNLSNDTGIAPLNIVMKLSS 360
           KLRLDANTKRLVFSDGLDLPQALRLYRHFSDRAMTGFGIGTNLSNDTGI PLNIVMKLSS
Sbjct: 301 KLRLDANTKRLVFSDGLDLPQALRLYRHFSDRAMTGFGIGTNLSNDTGITPLNIVMKLSS 360

Query: 361 CNGQAVAKLSDSPGKTLCKDETFLAYLRQLFGIAAPATPA 400
           CNGQAVAKLSDSPGKTLCKDETFLAYLRQLFGIAAPA PA
Sbjct: 361 CNGQAVAKLSDSPGKTLCKDETFLAYLRQLFGIAAPALPA 400


>gi|300310958|ref|YP_003775050.1| nicotinate
           phosphoribosyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 402

 Score =  405 bits (1041), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/396 (51%), Positives = 261/396 (65%), Gaps = 10/396 (2%)

Query: 4   VVRSLLETDLYKFTMWQALLHSHPGAQAEYTFVCRNQPQFPLAELKEEVERELDHLCSLR 63
           ++ SLL+TDLYKFTM Q +LH  PGAQ EY F CRN+    L    +E+  E+  LC LR
Sbjct: 13  IITSLLDTDLYKFTMMQVVLHHFPGAQVEYRFKCRNE-NVDLRPYVDEIRAEIAALCRLR 71

Query: 64  FSSDELAYLAQLRYMKSDFIDFLALFRFQRKFIEVSTE----GERLCIVARGPQVHVMGF 119
           F  DEL YL  LR++KSDF+DFL LF    K+I V  +    GE + I  +GP +H + F
Sbjct: 72  FKEDELNYLRSLRFIKSDFVDFLDLFHLNEKYITVQPDPAGNGE-IEISVKGPWLHTIMF 130

Query: 120 EIFVLYIVNELYFRRIGTPAAGVEARRRLQDKLTLLHAFAAEAPGRHPFEFFDFGVRRRY 179
           E+ VL IVNE+YFR         E R RL+ K++++     + P     +  D+G RRR+
Sbjct: 131 EVPVLAIVNEVYFRATQRSPDLEEGRARLRKKMSVI----TDDPELAGCKIADYGTRRRF 186

Query: 180 SGAWQEEVVATLAREVPQYFKGTSNVWLAKKYQLVPIGTMAHEYLQSYQSFGVRLRDFQK 239
           S +W  EV+  + + +  +F GTSNV  A ++ L P+GTMAHEYLQ+ Q+ G RLRD Q 
Sbjct: 187 SRSWHAEVIDEMKQHMGDHFAGTSNVMYAMQHDLTPLGTMAHEYLQACQALGPRLRDSQT 246

Query: 240 AALEDWVQEYRGDLGVALTDVVGMDAFLADFDLYFAKLFDGLRHDSGDPFEWGEKALAHY 299
            A E W +EYRGDLG+ L+DV GMDAFL D+D+YF KLFDG RHDSGDPFEWGE+ + HY
Sbjct: 247 FAFEMWAREYRGDLGITLSDVYGMDAFLRDYDMYFCKLFDGARHDSGDPFEWGERLIQHY 306

Query: 300 RKLRLDANTKRLVFSDGLDLPQALRLYRHFSDRAMTGFGIGTNLSNDTGIAPLNIVMKLS 359
           R  R+D ++K LVFSD LD  +   LY  F DRA   FG+GTNL+ND G  PL +VMK+ 
Sbjct: 307 RDNRVDPSSKVLVFSDSLDFDKVRALYLRFKDRAKVAFGVGTNLTNDLGYTPLQVVMKMV 366

Query: 360 SCNGQAVAKLSDSPGKTLCKDETFLAYLRQLFGIAA 395
            CNGQ VAKLSD+P K +C D  ++ YLRQ+F I A
Sbjct: 367 RCNGQPVAKLSDTPSKNMCDDPAYVNYLRQVFQIKA 402


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,297,985
Number of extensions: 54601
Number of successful extensions: 176
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 2
Length of query: 400
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 313
Effective length of database: 1,207,925
Effective search space: 378080525
Effective search space used: 378080525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)