BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0377.p (287 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313864|ref|YP_003777956.1| enzyme involved in meta-pathway... 563 e-162 gi|300312311|ref|YP_003776403.1| enzyme involved in meta-pathway... 63 2e-11 >gi|300313864|ref|YP_003777956.1| enzyme involved in meta-pathway of phenol degradation protein [Herbaspirillum seropedicae SmR1] Length = 316 Score = 563 bits (1452), Expect = e-162, Method: Compositional matrix adjust. Identities = 268/287 (93%), Positives = 284/287 (98%) Query: 1 MGGTSFFDGAPLPGGPGFYFVEYLTYTKATKLVDNNGNRLGFPATQDISVFAPISQFIYV 60 MGGTSFFDGAPLPGGPGFYFVEYLTY+KATKLVDNNGNRLGFPATQDISVFAP++QFIYV Sbjct: 30 MGGTSFFDGAPLPGGPGFYFVEYLTYSKATKLVDNNGNRLGFPATQDISVFAPVTQFIYV 89 Query: 61 PPGAKFGNKQLGFQVLVPWVANAKVDDGANNAILRGNTGIGDISAGVSVQYDPVMGAQGP 120 PPGAKFGNKQLGFQVLVPWVA+AKVDDGANNA+LRGNTGIGDISAGVSVQYDP+MGAQGP Sbjct: 90 PPGAKFGNKQLGFQVLVPWVASAKVDDGANNAVLRGNTGIGDISAGVSVQYDPIMGAQGP 149 Query: 121 LYSQRFELQFILPTGAYDRNATVNPGSNTWSFDPYWAGTLWASQNLSFSWRLHYLWNARN 180 LY+QRFELQFILPTGAYDRNATVNPGSNTW+FDPYWAGTLWASQNLSFSWRLHYLWNARN Sbjct: 150 LYAQRFELQFILPTGAYDRNATVNPGSNTWAFDPYWAGTLWASQNLSFSWRLHYLWNARN 209 Query: 181 NSPNAAFGNNVSSTQAGQAVHANFSAEYVLNPTLTIGAAGYWLQQITDTKVNGSDVGGRR 240 N+P+AAFGNNVSSTQAGQA HANF+AEYVLNPT T+GAAGYWLQQ+TDTKVNG+DV GRR Sbjct: 210 NAPSAAFGNNVSSTQAGQAAHANFAAEYVLNPTWTVGAAGYWLQQVTDTKVNGADVSGRR 269 Query: 241 ERVVGLGPAAMVRLSERDLLFFNVYQEFAVRNRAENSKFQVRYDHHF 287 ERVVGLGPAAM+RLSERDLLFFNVYQEFAVRNRAENSKFQ+RYDHHF Sbjct: 270 ERVVGLGPAAMMRLSERDLLFFNVYQEFAVRNRAENSKFQIRYDHHF 316 >gi|300312311|ref|YP_003776403.1| enzyme involved in meta-pathway of phenol degradation protein [Herbaspirillum seropedicae SmR1] Length = 316 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 67/163 (41%), Gaps = 17/163 (10%) Query: 128 LQFILPTGAYDRNATVNPGSNTWSFDPYWAGTLWASQNLSFSWRLHYLWNARNNSPNAAF 187 L PTGAY + N G N W++ P+ T S L S ++ N N P + Sbjct: 168 LMIQAPTGAYSTSKAFNAGVNHWTYSPFVGATYITSSGLELSTQVSLNVNTVN--PATRY 225 Query: 188 GNNVSSTQA---GQAVHANFSAEYVLNPTLTIGAAGYWLQQITDTKVNGSDVGGRRERVV 244 + V Q GQ + + T G AGY +Q++D GS G R RV Sbjct: 226 RSGVEYRQEFAIGQHIQ-----------SWTAGLAGYVYRQLSDDSGPGSG-DGNRGRVY 273 Query: 245 GLGPAAMVRLSERDLLFFNVYQEFAVRNRAENSKFQVRYDHHF 287 LGPA L+ + YQEF RNRAE +R F Sbjct: 274 ALGPAVSFAQPGLPLVTLHGYQEFGARNRAEGYNLALRLAMTF 316 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 967,595 Number of extensions: 40990 Number of successful extensions: 90 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 90 Number of HSP's successfully gapped: 2 Length of query: 287 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 203 Effective length of database: 1,222,130 Effective search space: 248092390 Effective search space used: 248092390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)