BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0366.p (122 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis pro... 147 2e-37 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 137 2e-34 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 134 2e-33 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 130 2e-32 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 129 9e-32 >gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 544 Score = 147 bits (372), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 77/120 (64%), Positives = 103/120 (85%) Query: 1 VVASEVRSLAQRSATAAREIKVLINDSVGRIDSGATLVQQAGSTMHDVVQSVQRVNAIIT 60 VVA+EVRSLAQRSA+AA+EIK LI+DSV ++++G+ LV AG+TM VV+SV+RV ++T Sbjct: 391 VVATEVRSLAQRSASAAKEIKQLIDDSVSKVENGSQLVMSAGNTMQQVVESVRRVTDVVT 450 Query: 61 EISAASREQSSGIEEIHRVITLMDESTQQNAALVEEAAAAAQAMRHQAGQLQEAVEVFRL 120 EISAASREQS GIE++++ I+ MD+STQ+NAALVEEA AAAQ+++ QA QL+ AV VF+L Sbjct: 451 EISAASREQSLGIEQVNQAISHMDQSTQENAALVEEATAAAQSLQEQARQLERAVNVFKL 510 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 137 bits (346), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 79/122 (64%), Positives = 106/122 (86%) Query: 1 VVASEVRSLAQRSATAAREIKVLINDSVGRIDSGATLVQQAGSTMHDVVQSVQRVNAIIT 60 VVASEVRSLAQRSA+AA+EIKVLI DSVG++++G+ LV+QAGSTMHD+V S++RV ++T Sbjct: 401 VVASEVRSLAQRSASAAKEIKVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMT 460 Query: 61 EISAASREQSSGIEEIHRVITLMDESTQQNAALVEEAAAAAQAMRHQAGQLQEAVEVFRL 120 EI+ A+REQSSGIE+++ I +D+ TQQNAALVE+AAAAA++++ QA LQ+ V VFRL Sbjct: 461 EINHANREQSSGIEQVNEAIIQIDDMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRL 520 Query: 121 EA 122 +A Sbjct: 521 DA 522 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 134 bits (337), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/120 (68%), Positives = 101/120 (84%) Query: 1 VVASEVRSLAQRSATAAREIKVLINDSVGRIDSGATLVQQAGSTMHDVVQSVQRVNAIIT 60 VVASEVR+LAQRSA+AA+EIK LINDSVG++D G+ LV+QAG+TM +VV SV+RV I+ Sbjct: 395 VVASEVRTLAQRSASAAKEIKELINDSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVA 454 Query: 61 EISAASREQSSGIEEIHRVITLMDESTQQNAALVEEAAAAAQAMRHQAGQLQEAVEVFRL 120 EISAAS EQ+ GIE+I+ IT MD+ TQQNAALVEEAAAAA +M+ QAG+L + V VFRL Sbjct: 455 EISAASTEQTHGIEQINLAITQMDQVTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRL 514 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 130 bits (328), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 79/121 (65%), Positives = 100/121 (82%) Query: 1 VVASEVRSLAQRSATAAREIKVLINDSVGRIDSGATLVQQAGSTMHDVVQSVQRVNAIIT 60 VVA+EVRSLAQRSA AA+EIK LI DSVG+++ G+ LV QAG+TM VV SV+ V I+ Sbjct: 397 VVATEVRSLAQRSAAAAKEIKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVA 456 Query: 61 EISAASREQSSGIEEIHRVITLMDESTQQNAALVEEAAAAAQAMRHQAGQLQEAVEVFRL 120 EISAAS EQSSGIEEI+R +T MDE TQQNAALVE+AAAAA++M+ QA +L +++ +F+L Sbjct: 457 EISAASAEQSSGIEEINRAVTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKL 516 Query: 121 E 121 E Sbjct: 517 E 517 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 129 bits (323), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 79/121 (65%), Positives = 101/121 (83%) Query: 1 VVASEVRSLAQRSATAAREIKVLINDSVGRIDSGATLVQQAGSTMHDVVQSVQRVNAIIT 60 VVASEVRSLAQRSA+AA+EIK LI+DSV ++D G+ LV +AG TM +VVQSV RV A++ Sbjct: 392 VVASEVRSLAQRSASAAKEIKQLIDDSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVR 451 Query: 61 EISAASREQSSGIEEIHRVITLMDESTQQNAALVEEAAAAAQAMRHQAGQLQEAVEVFRL 120 EI+ AS+EQS GIE+++ IT +DE+TQQNAALVE+AAAAA++M+ QA L +AV VFRL Sbjct: 452 EITLASQEQSDGIEQVNLAITHIDETTQQNAALVEQAAAAARSMQDQAASLTDAVSVFRL 511 Query: 121 E 121 E Sbjct: 512 E 512 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.311 0.121 0.293 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 207,331 Number of extensions: 5579 Number of successful extensions: 193 Number of sequences better than 1.0e-08: 65 Number of HSP's gapped: 173 Number of HSP's successfully gapped: 65 Length of query: 122 Length of database: 1,619,870 Length adjustment: 74 Effective length of query: 48 Effective length of database: 1,269,480 Effective search space: 60935040 Effective search space used: 60935040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 125 (52.8 bits)