BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0363.p
         (479 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310006|ref|YP_003774098.1| pyruvate kinase II protein [Her...   327   1e-90

>gi|300310006|ref|YP_003774098.1| pyruvate kinase II protein
           [Herbaspirillum seropedicae SmR1]
          Length = 477

 Score =  327 bits (838), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 192/474 (40%), Positives = 265/474 (55%), Gaps = 3/474 (0%)

Query: 5   RQAKIVATLGPSSATPEMIRALFDAGADVFRFNFSHGSHADHHARYHIVRQVEREVGRPI 64
           R  KIVAT+GP+S+  E +  +  AG DV R NFSHG   DH  R  +VR+V  E G+ +
Sbjct: 3   RATKIVATIGPASSDRETLTRMIRAGVDVVRLNFSHGKPQDHIDRATLVREVADECGKKV 62

Query: 65  GVLADLQGPKLRIGQFDGGRAVLQAGQVFTLDRDVSPGDQHRVCLPHPELFEAIHAGQSL 124
            ++ADLQGPK+R+G+F+ G+ +L  G  F LD D   G+Q RV L +  L   +     L
Sbjct: 63  AIMADLQGPKIRVGKFENGKIMLANGDKFILDADCQMGNQERVGLDYKALPRDLKGNDVL 122

Query: 125 LIDDGKLRLQVEASDGHAIRTRVVNGGVVSDRKGVNVPDAVLPIPALTAKDRRDLDFALE 184
           L++DG + L+VE   G+ I T V  GG +S+ KG+N     L  PALTAKD  D+  A+ 
Sbjct: 123 LLNDGLIVLKVERVMGNEIHTVVKIGGELSNNKGINRQGGGLSAPALTAKDMDDIKTAMS 182

Query: 185 MGADWIALSFVQRPEDVQEARALVIKKKKKKKKKKKKXSKLEKPAALERLDEIVAVSDAI 244
             AD++A+SF +   D++ AR L     +    K    +K+E+  A+  L EI+  SD I
Sbjct: 183 FQADYVAVSFPKNATDMEMARQLSNVAGEPFGHKPMMIAKIERAEAIPLLQEILDASDGI 242

Query: 245 MVARGDLGVELPPECVPGTQKRILRACRQQGKPIVIATQMLESMIAAPVPTRAEVSDVAS 304
           MVARGDL VE+    VPG QKR+++  R   K  + ATQM+ESMI   VPTRAEVSDVA+
Sbjct: 243 MVARGDLAVEVGNAAVPGLQKRMIKMARASNKLTITATQMMESMIVNAVPTRAEVSDVAN 302

Query: 305 AIYDGSDAVMLSAESANGSYPLQAVTMMDRVIAEVEKDPLYRTLMQAQYATPERNRPD-A 363
           A+ DG+DAVM SAE+A+G YP++ V  M  +  E E+       + A +      R D +
Sbjct: 303 AVLDGTDAVMTSAETASGKYPVETVEAMHAICLEAERSE--NVQLDADFLNLRFTRVDQS 360

Query: 364 ICAALRDVTGILGASATVTYTSSGHTSLRAARERPAAPILSITPQLATARWLALVWGVHS 423
           I          L   A    T SG T+L  +R     PI +ITP +AT R  AL   VH+
Sbjct: 361 IAYGALFTAHHLRVKAIAALTESGSTALWMSRHNIDIPIFAITPNVATRRKAALFRNVHT 420

Query: 424 TISEAVHDERQMVSAACQAAVREGFARQGDQIAITAGMPFGQPGSTNLLRVAEV 477
                  D   M+  A    + +G  ++GD I +T G P GQ G TN L++  V
Sbjct: 421 LELAQCPDTEAMLKGAQDLLLAQGVVQKGDLIVVTWGEPIGQVGGTNALKILRV 474


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,507,797
Number of extensions: 63392
Number of successful extensions: 258
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 390
Effective length of database: 1,198,455
Effective search space: 467397450
Effective search space used: 467397450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)