BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0358.p (174 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312334|ref|YP_003776426.1| transcription regulator protein... 195 2e-51 gi|300309921|ref|YP_003774013.1| LysR family transcription regul... 118 3e-28 gi|300310802|ref|YP_003774894.1| LysR family transcription regul... 117 7e-28 gi|300313065|ref|YP_003777157.1| LysR family transcription regul... 112 1e-26 gi|300313017|ref|YP_003777109.1| LysR family transcription regul... 112 1e-26 >gi|300312334|ref|YP_003776426.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 195 bits (495), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 88/169 (52%), Positives = 118/169 (69%), Gaps = 1/169 (0%) Query: 2 DLVREGYDLGIRIGGAIEPSFVAVRLASNRRVVCAAPEYLHRHGVPRTLDDLAQHNCLAF 61 D++ EG D+ IRI + + V+V+LA N RV+ AAP YL RHG P++ D+L +HNCLA Sbjct: 133 DVIGEGIDVAIRIATLTDSNLVSVKLAENHRVIVAAPAYLRRHGTPQSPDELMRHNCLAM 192 Query: 62 NLQGGQQRGWYFQQGGKPVIAKVQGNLDCNDGELLHRWASEGLGLAWRSTWEIQAQLASG 121 + +G QRGW +Q GK + KV GN+ CNDGE+LH WA G GLAWRS WE+ A + +G Sbjct: 193 SSEG-SQRGWTLRQSGKVSVYKVGGNMVCNDGEVLHNWALAGRGLAWRSMWEVGAAIEAG 251 Query: 122 ELVTVLDEYALPHYDIMAVYPQQRHLPAKTRFFIDYLKDVYGQQDYWNR 170 ELVTVLD++A P I AV+ Q+RHLP + R F+D+L+ Y Q DYW + Sbjct: 252 ELVTVLDKFAAPAPSIYAVFAQRRHLPLRIRAFVDFLRHAYAQPDYWKK 300 >gi|300309921|ref|YP_003774013.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 299 Score = 118 bits (295), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 62/169 (36%), Positives = 93/169 (55%), Gaps = 2/169 (1%) Query: 1 VDLVREGYDLGIRIGGAIEPSFVAVRLASNRRVVCAAPEYLHRHGVPRTLDDLAQHNCLA 60 VD++ EGYD+ IRI + + V +L S VCA+P YL HG P +LAQH ++ Sbjct: 132 VDIIDEGYDMAIRIARLSDSTLVHRKLTSTSLHVCASPAYLDAHGTPAHPHELAQHQTIS 191 Query: 61 FNLQGGQQRGWYFQQGGKPVIAKVQGNLDCNDGELLHRWASEGLGLAWRSTWEIQAQLAS 120 ++ + W F PV +V L N+G+ + A G+G+ + T+ I L S Sbjct: 192 YSYNQSKDE-WQFNGPEGPVSVRVSSRLHVNNGDSCVQAALGGIGITRQPTFMIDQYLRS 250 Query: 121 GELVTVLDEYALPHYDIMAVYPQQRHLPAKTRFFIDYLKDVYGQQDYWN 169 G+LV++L +Y P I AVYP + HLPAK R +D+L + + Q +WN Sbjct: 251 GQLVSILGDYGAPELGIYAVYPSRAHLPAKMRAMLDFLTEAFAQV-HWN 298 >gi|300310802|ref|YP_003774894.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 304 Score = 117 bits (292), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 66/160 (41%), Positives = 90/160 (56%), Gaps = 3/160 (1%) Query: 1 VDLVREGYDLGIRIGGAIEPSFVAVRLASNRRVVCAAPEYLHRHGVPRTLDDLAQHNCLA 60 +DLV EG DL IR+G EP + R+ ++RV+CA+P YL +HG+P L L QH CL Sbjct: 135 IDLVNEGIDLDIRVGAGHEPHLFSKRILPSQRVLCASPAYLKKHGLPADLAALRQHQCLV 194 Query: 61 FNLQGGQQRGWYFQQGGKPV-IAKVQGNLDCNDGELLHRWASEGLGLAWRSTWEIQAQLA 119 + Q G + G K V KV G L N GE++H+WA +G G+ RS W++ L Sbjct: 195 IR-ERNQSFGIWRMMGPKGVETVKVSGMLASNHGEIIHQWAVDGHGIILRSAWDVADSLK 253 Query: 120 SGELVTVLDEYALPHYDIMAVYPQQRHLPAKTRFFIDYLK 159 G LV VL +Y D+ AVYP Q AK R + +L+ Sbjct: 254 RGRLVRVLPQY-YQEADLCAVYPLQLKNSAKVRECVRFLQ 292 >gi|300313065|ref|YP_003777157.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 112 bits (281), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 56/130 (43%), Positives = 81/130 (62%), Gaps = 1/130 (0%) Query: 2 DLVREGYDLGIRIGGAIEPSFVAVRLA-SNRRVVCAAPEYLHRHGVPRTLDDLAQHNCLA 60 D+ R+ D+ IR + S VA+ LA NRRV+CA+P+YL RHG PR+ DL QHNCL Sbjct: 133 DMYRQPVDVAIRYSAPDDSSLVALPLAPDNRRVLCASPDYLARHGRPRSPADLRQHNCLR 192 Query: 61 FNLQGGQQRGWYFQQGGKPVIAKVQGNLDCNDGELLHRWASEGLGLAWRSTWEIQAQLAS 120 + L W F + +PV +V G+ C+DGEL+ RWA G G+A++S ++ A L + Sbjct: 193 YVLSDTLHSQWNFFKDDEPVQVQVSGDRTCDDGELVRRWAVNGRGIAYKSRLDVLADLRN 252 Query: 121 GELVTVLDEY 130 G L +L++Y Sbjct: 253 GRLEALLEDY 262 >gi|300313017|ref|YP_003777109.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 112 bits (281), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 65/174 (37%), Positives = 95/174 (54%), Gaps = 4/174 (2%) Query: 1 VDLVREGYDLGIRIGGAIEPSFVAVR-LASNRRVVCAAPEYLHRHGVPRTLDDLAQHNCL 59 +DL+ DL IR + +AVR LA+ RR++ AAP YL G PRTLDDLAQH+ L Sbjct: 132 MDLLDSDIDLAIRTREFEPDANIAVRRLATTRRILAAAPGYLAARGTPRTLDDLAQHDLL 191 Query: 60 AFNLQGGQQRGWYFQQGGKPVIAKVQGNLDCNDGELLHRWASEGLGLAWRSTWEIQAQLA 119 ++ R + G +++ + NDG+++ A EGLG+ + + I + Sbjct: 192 VYSHAKEPNRLHLSGRDGSQRTLEIKSLMQSNDGQIIRAAALEGLGILIQPNYIIYDDIV 251 Query: 120 SGELVTVLDEYALPHYDIMAVYPQQRHLPAKTRFFIDYLKDVYGQQDY---WNR 170 +G LV VLDE+ LP I Y ++HLPA+ R FID+L + + DY W R Sbjct: 252 AGRLVPVLDEWDLPRLSINIAYQGRKHLPARVRVFIDFLVQHFEEMDYERKWTR 305 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.140 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 630,068 Number of extensions: 27603 Number of successful extensions: 131 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 102 Number of HSP's successfully gapped: 27 Length of query: 174 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 95 Effective length of database: 1,245,805 Effective search space: 118351475 Effective search space used: 118351475 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)