BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0355.p
         (518 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit ...   880   0.0  
gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase s...    87   2e-18

>gi|300312559|ref|YP_003776651.1| xanthine dehydrogenase subunit A
           [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score =  880 bits (2275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/483 (89%), Positives = 458/483 (94%)

Query: 1   MPETTRPIQFYFRGQTHEVAGQPTTRTVLQHLREDLHCTGTKEGCAEGDCGACTVVVGEL 60
           M ET   IQFYFRGQTH VAG   TRTVLQHLREDLHCTGTKEGCAEGDCGACTVVVGEL
Sbjct: 1   MSETHSSIQFYFRGQTHSVAGHSPTRTVLQHLREDLHCTGTKEGCAEGDCGACTVVVGEL 60

Query: 61  RDDQLELKTVNACIQFLPTLDGRALFTVEDLKQSDGCLHPVQQAMVECHGSQCGFCTPGF 120
           + +QL LKTVNACIQFLPTLDGRALFTVEDLKQ+DG LHPVQQAMVECHGSQCGFCTPGF
Sbjct: 61  QGEQLALKTVNACIQFLPTLDGRALFTVEDLKQADGSLHPVQQAMVECHGSQCGFCTPGF 120

Query: 121 VMSLWGLYLKHDKDGITPDKREIDDALSGNLCRCTGYRPIIDAARRMGELPKVEFDREAV 180
           VMSLWGLYL+H++DG+TP KREIDDALSGNLCRCTGYRPIIDAARRMGELPKVEFDREA+
Sbjct: 121 VMSLWGLYLRHEQDGVTPSKREIDDALSGNLCRCTGYRPIIDAARRMGELPKVEFDREAI 180

Query: 181 KTALRAIDQDTPLAVTHSGQTFHAPRTLAQLVQLRADLPKARILAGSTDVGLWVTKQMRE 240
           K ALR+IDQ  PLA+TH+GQTFHAPRTLAQL QLRADLP+ARILAGSTDVGLWVTKQMRE
Sbjct: 181 KAALRSIDQQQPLALTHAGQTFHAPRTLAQLAQLRADLPQARILAGSTDVGLWVTKQMRE 240

Query: 241 LGDIVYIGRVEELRAMQVQDGMLEIGAGVSLEEAYAEAARHYPEELSELWQRFASLPVRN 300
           LGD++YIGRVEELRAMQV+D MLEIGAGV LEEAYAEAARHYPEELSELWQRFASLPVRN
Sbjct: 241 LGDLLYIGRVEELRAMQVRDEMLEIGAGVCLEEAYAEAARHYPEELSELWQRFASLPVRN 300

Query: 301 AGTLGGNVANGSPIGDSMPWLIALGAQIVLASVRGQRVMPLEDFYLAYQKSALQPDEVVQ 360
           AGTLGGN+ANGSPIGDSMPWLIALGAQIVL SVRGQRVMPLEDFYLAYQKSALQ DE+VQ
Sbjct: 301 AGTLGGNLANGSPIGDSMPWLIALGAQIVLYSVRGQRVMPLEDFYLAYQKSALQADELVQ 360

Query: 361 AVRIPLPRKDVRFRVYKLSKRFDQDISAVCAAFALRMDGDTIAEARIAFGGMAATPKRAA 420
           AVRIPLPRK++RFRVYKLSKRFDQDISAVCAAFAL+M GDTI +ARIA+GGMAATPKRAA
Sbjct: 361 AVRIPLPRKELRFRVYKLSKRFDQDISAVCAAFALQMQGDTIVQARIAYGGMAATPKRAA 420

Query: 421 HAEALLQGGTWSEAQVQAAMAALAQDYAPLSDMRASAAYRLRTAQNLLYRYWLETRTDAP 480
            AEA+LQGG WSEAQ QAAMAALAQDYAPLSDMRASAAYRLRTAQNLLYRYWLETR+DAP
Sbjct: 421 QAEAVLQGGPWSEAQAQAAMAALAQDYAPLSDMRASAAYRLRTAQNLLYRYWLETRSDAP 480

Query: 481 LAR 483
           LAR
Sbjct: 481 LAR 483


>gi|300310654|ref|YP_003774746.1| isoquinoline 1-oxidoreductase
           subunit alpha oxidoreductase [Herbaspirillum seropedicae
           SmR1]
          Length = 160

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 88/168 (52%), Gaps = 18/168 (10%)

Query: 7   PIQFYFRGQ--THEVAGQPTTRTVLQHLREDLHCTGTKEGCAEGDCGACTVVVGELRDDQ 64
           PI F+  G   + ++A       +L  LR DL   G K GC  G+CGACTV+V  +    
Sbjct: 6   PITFHVNGVPVSLDIAADAP---LLNVLRNDLCLNGPKFGCGLGECGACTVLVDGV---- 58

Query: 65  LELKTVNACIQFLPTLDGRALFTVEDLKQSDGCLHPVQQAMVECHGSQCGFCTPGFVMSL 124
                  +C+  L  +  R + T++ L+Q DG L PVQQA ++  G+QCG+C  G +M++
Sbjct: 59  ----AARSCVIPLAGVAARHVTTLDGLEQ-DGRLDPVQQAFIDEQGAQCGYCLNGMIMTI 113

Query: 125 WGLYLKHDKDGITPDKREIDDALSGNLCRCTGYRPIIDAARRMGELPK 172
             L L+      TP + EI   L  NLCRC  +  I+ AA R  EL +
Sbjct: 114 KALLLRSP----TPSEDEIRHELDFNLCRCGTHVEILRAALRAVELQR 157


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,649,099
Number of extensions: 68722
Number of successful extensions: 229
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 2
Length of query: 518
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 429
Effective length of database: 1,198,455
Effective search space: 514137195
Effective search space used: 514137195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)