BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0350.p (200 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312563|ref|YP_003776655.1| transcription regulator protein... 358 e-100 gi|300310688|ref|YP_003774780.1| transcription regulator protein... 140 9e-35 >gi|300312563|ref|YP_003776655.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 200 Score = 358 bits (918), Expect = e-100, Method: Compositional matrix adjust. Identities = 173/200 (86%), Positives = 186/200 (93%) Query: 1 MRKKSEERRQQMIDIAAEVFNEIGFEGASMAEISARIGGSKATLYNYFSSKEEIFVEVMI 60 MRKKSEERRQ MIDIAAEVFNEIGFE ASMAEISARIGGSKATLYNYF+SKEEIFVEVMI Sbjct: 1 MRKKSEERRQAMIDIAAEVFNEIGFEAASMAEISARIGGSKATLYNYFNSKEEIFVEVMI 60 Query: 61 KQVGCQFEELFMALRNEDEVRAGLLRLANHYLGVVFRPEIVAVKRLGMYYAGKSELGPLL 120 KQVGCQFEELFMALRNED+V+ GLLRLA HYL VVFRPEIVAVKRLG+YYAGKS LGPLL Sbjct: 61 KQVGCQFEELFMALRNEDDVKGGLLRLARHYLRVVFRPEIVAVKRLGIYYAGKSNLGPLL 120 Query: 121 YERGPKRGWTRIADFLKVKMDEGKLHAGDPWIAAMQFRALIEAEWMDVRMLNVVTEIPPD 180 YERGPKRGWTRIA+FL+ KM+EGKLH DPW+AAMQ+R L+EAEWM+VRMLNVVT+I D Sbjct: 121 YERGPKRGWTRIAEFLQAKMEEGKLHRTDPWLAAMQYRGLMEAEWMEVRMLNVVTDIAED 180 Query: 181 QLRTSAERAVEAFLYLYQPR 200 QL SA+RAVEAFLYLYQPR Sbjct: 181 QLDASAQRAVEAFLYLYQPR 200 >gi|300310688|ref|YP_003774780.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 201 Score = 140 bits (352), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 81/198 (40%), Positives = 115/198 (58%), Gaps = 1/198 (0%) Query: 1 MRKKSEERRQQMIDIAAEVFNEIGFEGASMAEISARIGGSKATLYNYFSSKEEIFVEVMI 60 MR K+ ERR ++ AAEVF E GFEGASMA ISARIGGSK TLY+YF SKEE+FV V Sbjct: 1 MRVKTAERRDAILAAAAEVFLEEGFEGASMAGISARIGGSKGTLYSYFKSKEELFVAVTH 60 Query: 61 KQVGCQFEELFMAL-RNEDEVRAGLLRLANHYLGVVFRPEIVAVKRLGMYYAGKSELGPL 119 +Q Q E AL ++ +++ L + + + + R+ + +G+S++G Sbjct: 61 EQAKKQMEPALAALEKDTGDLQKTLQVFGEKAVSFLCQESTLQTHRMIVAESGRSDIGRR 120 Query: 120 LYERGPKRGWTRIADFLKVKMDEGKLHAGDPWIAAMQFRALIEAEWMDVRMLNVVTEIPP 179 +E GPK G RIA FL +M G+L DP +A +Q AL++ E + ML + + I Sbjct: 121 FHESGPKLGMERIAAFLSRQMQAGRLKQADPMLATLQLCALLDCETVKPMMLGLESAISR 180 Query: 180 DQLRTSAERAVEAFLYLY 197 +++ RAVE FL Y Sbjct: 181 PRMKRMVGRAVETFLAAY 198 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 577,802 Number of extensions: 22357 Number of successful extensions: 70 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 70 Number of HSP's successfully gapped: 2 Length of query: 200 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 119 Effective length of database: 1,236,335 Effective search space: 147123865 Effective search space used: 147123865 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)