BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0330.p
         (622 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310219|ref|YP_003774311.1| bacteriophage-related tail tran...    60   5e-10

>gi|300310219|ref|YP_003774311.1| bacteriophage-related tail
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 874

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 23/220 (10%)

Query: 292 QLFGRESIEAIAPMLTNLDKLK---------ENLDKVTD-STKFANSMNQEYAARAATTA 341
           Q+   E +   A  +  LDKL          E L KV D   +  + +   YAA      
Sbjct: 487 QIHKNEKLNRGAANIDELDKLGRDTASGKELETLSKVADLKLELGSKILPLYAAGLEMAT 546

Query: 342 NNIQLFT-----NRVIALGINVGNVMLPPLNSLLAVAGPITDGIASMAAANPWLIKGLVG 396
           N +Q  T     N   A  + VG      +  ++ V GP+   +AS+    P+ +  ++ 
Sbjct: 547 NAVQALTGFMERNPATAKAMIVG---FSAIAGIMVVMGPLMLALASVIG--PYAMLHVLF 601

Query: 397 AAVGFVG-LRIAVLGATMATKLFLA-VSNLTPIGIAVRLIALAAGFLIANWRSVGPFFSQ 454
           A +G  G L + +L       ++L  V  + PIG+AV  IA AA  L  NW  +  FF  
Sbjct: 602 AKIGLQGNLLMPILRGIGTVFMWLGRVFLMNPIGLAVTAIAGAAYLLYRNWEPIAGFFGN 661

Query: 455 MWDVVKSGFAAGWEFIKT-VFGFTPLGMIIKNWEPIVDWF 493
           +W  V++ FA G   +   +  ++PLG+  + +  ++ WF
Sbjct: 662 LWQQVRAAFAGGLGGVAALIINWSPLGIFYQAFAGVLSWF 701


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,599,972
Number of extensions: 58810
Number of successful extensions: 288
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 531
Effective length of database: 1,188,985
Effective search space: 631351035
Effective search space used: 631351035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)