BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0303.p
         (883 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312567|ref|YP_003776659.1| DNA mismatch repair protein [He...  1711   0.0  

>gi|300312567|ref|YP_003776659.1| DNA mismatch repair protein
           [Herbaspirillum seropedicae SmR1]
          Length = 894

 Score = 1711 bits (4430), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 840/885 (94%), Positives = 860/885 (97%), Gaps = 3/885 (0%)

Query: 1   MMQQYLRIKADHPNTLVFYRMGDFYELFFEDAEKASRLMGVTLTQRGSSNGNPIKMAGVP 60
           MMQQYLRIKADHPNTLVFYRMGDFYELFFEDAEKASRLMGVTLTQRGSSNG PIKMAGVP
Sbjct: 11  MMQQYLRIKADHPNTLVFYRMGDFYELFFEDAEKASRLMGVTLTQRGSSNGTPIKMAGVP 70

Query: 61  FHSVEQYLARLIKLGESVAICEQIGDPATSKGPVERKVVRVVTPGTLTDSDLLPEKSERC 120
           FHSVEQYLARLIKLGESVAICEQIGDPATSKGPVERKVVRVVTPGTLTDSDLLPEK+ERC
Sbjct: 71  FHSVEQYLARLIKLGESVAICEQIGDPATSKGPVERKVVRVVTPGTLTDSDLLPEKAERC 130

Query: 121 LLAMQLLPSKSRKQMQVGLAWLSMASGALKMMEFTVESSLLDGRVKQELERISAAEVLVA 180
           LLAMQL+PSKSRKQMQVGL+WLSMASGALKMMEFTVE++LLDGRVKQELERISAAEVLVA
Sbjct: 131 LLAMQLVPSKSRKQMQVGLSWLSMASGALKMMEFTVEAALLDGRVKQELERISAAEVLVA 190

Query: 181 DGQLEQCEPLLPNRAVTVPDWHFDQPSSEKALLDQLGVATLHGFGADGLGPAICAAGALL 240
           DGQLE CEPLLPNRAVTVPDWHFDQPSSEKALLDQLGVATLHGFGADGLGPAICAAGALL
Sbjct: 191 DGQLEWCEPLLPNRAVTVPDWHFDQPSSEKALLDQLGVATLHGFGADGLGPAICAAGALL 250

Query: 241 RYAQSTQGRGLQHVRTLTVESENEFIGLDAATRRNLELTETIRSQDANALAPTLFSTLDH 300
           RYAQSTQGRGLQHVRTLTVESENEFIGLDAATRRNLELTETIRSQDANALAPTLFSTLDH
Sbjct: 251 RYAQSTQGRGLQHVRTLTVESENEFIGLDAATRRNLELTETIRSQDANALAPTLFSTLDH 310

Query: 301 CRTAMGSRLLRHWLHHALRDQQVARERHAAINALMRTDACSGLSATLAAVPDIERITTRI 360
           CRTAMGSRLLRHWLHHALRDQQVAR RHAAINALMRTDACSGLSATLAAVPDIERITTRI
Sbjct: 311 CRTAMGSRLLRHWLHHALRDQQVARARHAAINALMRTDACSGLSATLAAVPDIERITTRI 370

Query: 361 ALLSARPRDLAGLRSGLQQLGSLRAYVEMCARDAEAPLLGKLHEDLATPVECLDLLERAI 420
           ALLSARPRDLAGLR+GLQQLGSLRAYVEMC RDA+A LL +LHEDLATPVECLDLLERAI
Sbjct: 371 ALLSARPRDLAGLRAGLQQLGSLRAYVEMCGRDADASLLTQLHEDLATPVECLDLLERAI 430

Query: 421 MLEPAAMVRDGGVIARGYDAELDELRGLSENAGQYLLELEARERERTGIANLRVEYNKVH 480
           MLEPAAMVRDGGVIARG+DAELDELRGLSENAGQYLL+LEARERERTGIANLRVEYNKVH
Sbjct: 431 MLEPAAMVRDGGVIARGFDAELDELRGLSENAGQYLLDLEARERERTGIANLRVEYNKVH 490

Query: 481 GFYIEVTHGQTDKVPEDYRRRQTLKNAERYIIPELKAFEDKALSAQERSLSREKFLYEQL 540
           GFYIEVTHGQTDKVPEDYRRRQTLKNAERYIIPELKAFEDKALSAQERSLSREKFLYEQL
Sbjct: 491 GFYIEVTHGQTDKVPEDYRRRQTLKNAERYIIPELKAFEDKALSAQERSLSREKFLYEQL 550

Query: 541 LNDMGAHIVRLQSIAHALAQLDTLVALADHAVRNNWCAPQLVDEPCIQIEQGRHPVVENQ 600
           L DMGAHIVRLQ+IAHALAQLDTLVALADHAVRNNWCAPQLVDEPCIQIEQGRHPVVENQ
Sbjct: 551 LGDMGAHIVRLQAIAHALAQLDTLVALADHAVRNNWCAPQLVDEPCIQIEQGRHPVVENQ 610

Query: 601 IERFIANDCQLAAERKLLLITGPNMGGKSTFMRQVALITLLAYVGSFVPATSAVIGPIDR 660
           IERFIANDCQLAAER+LLLITGPNMGGKS FMRQVALITLLAYVGSFVPATSAVIGP+DR
Sbjct: 611 IERFIANDCQLAAERRLLLITGPNMGGKSIFMRQVALITLLAYVGSFVPATSAVIGPVDR 670

Query: 661 IFTRIGAADDLAGGRSTFMVEMTESASILNNATEHSLVLMDEVGRGTSTFDGLALAWAIA 720
           IFTRIGAADDLAGGRSTFMVEMTESA+ILNNATEHSLVLMDEVGRGTSTFDGLALAWAIA
Sbjct: 671 IFTRIGAADDLAGGRSTFMVEMTESAAILNNATEHSLVLMDEVGRGTSTFDGLALAWAIA 730

Query: 721 KHLIDVTRSFTLFATHYFELTQLPEIHPTAANVHLSAVEHKDSIVFLHAVQSGPASQSYG 780
           KHLIDVTRSFTLFATHYFELTQLPEIHPTAANVHLSAVEHKDSIVFLHAVQSGPASQSYG
Sbjct: 731 KHLIDVTRSFTLFATHYFELTQLPEIHPTAANVHLSAVEHKDSIVFLHAVQSGPASQSYG 790

Query: 781 LQVAQLAGVPAPVIRAARKHLSALESQSMQPTPQFDLFSAPSFME--TQAETEEADHERN 838
           LQVAQLAGVPA VIRAARKHLSALESQSMQ TPQFDLFSAP+F    TQ E + AD ER+
Sbjct: 791 LQVAQLAGVPAQVIRAARKHLSALESQSMQATPQFDLFSAPAFATPGTQDEPDPAD-ERS 849

Query: 839 PASAVEPDPLAQALLQSLDGIDPDALTPRQALDALYQLKALSRGQ 883
            + AVEPDPLAQALLQ+L  IDPDALTPRQAL+ALYQLKAL   Q
Sbjct: 850 ESDAVEPDPLAQALLQTLAQIDPDALTPRQALEALYQLKALQAPQ 894


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,561,280
Number of extensions: 103483
Number of successful extensions: 415
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 414
Number of HSP's successfully gapped: 1
Length of query: 883
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 789
Effective length of database: 1,174,780
Effective search space: 926901420
Effective search space used: 926901420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 135 (56.6 bits)