BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0302.p
         (313 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312568|ref|YP_003776660.1| transmembrane protein [Herbaspi...   516   e-148

>gi|300312568|ref|YP_003776660.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 308

 Score =  516 bits (1330), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 248/282 (87%), Positives = 262/282 (92%), Gaps = 1/282 (0%)

Query: 32  DFSFGVINHAAPGVKGDQALRQALTETDADNLAFVVVNGIKSPSESCDDALYAERHEMLS 91
           DFSFGVINHAA G KG+  LRQAL ETDADNLAFVVVNGIKSPSESCDD LY  RHE+LS
Sbjct: 28  DFSFGVINHAAAG-KGEDTLRQALAETDADNLAFVVVNGIKSPSESCDDTLYNARHELLS 86

Query: 92  QAQNGIFVSLAGSDWITCRDRENRSDAIERLARMREIFYASEFSLGASRLPMLRQSLTPK 151
           QAQNG+F+SLAGSDWITCRDRENRSDAIERLARMREIFY+ EFSLGA+RLPMLRQSLTPK
Sbjct: 87  QAQNGVFLSLAGSDWITCRDRENRSDAIERLARMREIFYSGEFSLGATRLPMLRQSLTPK 146

Query: 152 FRSYAENTRWEIGNVLFATVNLPAANNHFLLDGGRNNEFEDRLIANRNWLQHLFAFAALK 211
           FRSYAENTRWE+GNV+FATVNLPA NNHFLLDGGRNNEFEDRLIANRNWLQHLFAFAALK
Sbjct: 147 FRSYAENTRWEVGNVIFATVNLPAGNNHFLLDGGRNNEFEDRLIANRNWLQHLFAFAALK 206

Query: 212 KSAAIVFFSDGNPFGPPPKRSFFRTQRDGFAETRKLFSELAGKFQGRVLVVHAQGGKNKA 271
           KSAAIVFFSDGNPFGPPPKRSFFR QRDGFAETR+LFS+L+G F GRVLVVH Q  K K 
Sbjct: 207 KSAAIVFFSDGNPFGPPPKRSFFRAQRDGFAETRRLFSDLSGNFAGRVLVVHGQAPKPKT 266

Query: 272 PAHILWTGNLGSVGVGERWLKVVVDDHLPQLFAVADADGERR 313
           P+HILWTG LG+V VGERWLK+VVDDHLPQLFAVADADGERR
Sbjct: 267 PSHILWTGKLGNVAVGERWLKIVVDDHLPQLFAVADADGERR 308


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 975,127
Number of extensions: 39398
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,217,395
Effective search space: 277566060
Effective search space used: 277566060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)