BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0300.p
         (378 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312570|ref|YP_003776662.1| hypothetical protein Hsero_3273...   707   0.0  

>gi|300312570|ref|YP_003776662.1| hypothetical protein Hsero_3273
           [Herbaspirillum seropedicae SmR1]
          Length = 386

 Score =  707 bits (1825), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/376 (90%), Positives = 359/376 (95%)

Query: 1   MATMKKLDLLGGITPAQFLRDYWHKKPLLIRNAIPGFTAPLPRQELFDLARRDDVESRLI 60
           MA MKKLDLLGGITPAQFLRDYWHKKPLLIRNAIPGF+APLPRQELFDL+RRDDVESRLI
Sbjct: 11  MAGMKKLDLLGGITPAQFLRDYWHKKPLLIRNAIPGFSAPLPRQELFDLSRRDDVESRLI 70

Query: 61  THRTDGWDMQHGPFNKLPPLKQKAWTLLVQGVNLHHPAADALLRQFRFVPDARLDDLMIS 120
           THR  GWDMQHGPFNKLPPLKQKAWTLLVQGVNLHHPAADALLRQFRFVPDARLDDLMIS
Sbjct: 71  THREGGWDMQHGPFNKLPPLKQKAWTLLVQGVNLHHPAADALLRQFRFVPDARLDDLMIS 130

Query: 121 YATDGGGVGPHFDSYDVFLLQAHGQRRWRISAQDDLTLEEGVPLKILSNFEAEQEFVLEP 180
           YA+DGGGVGPHFDSYDVFLLQAHGQRRWRISAQDDLTLEEGVPLKILS+F+AE+EFVLEP
Sbjct: 131 YASDGGGVGPHFDSYDVFLLQAHGQRRWRISAQDDLTLEEGVPLKILSHFQAEEEFVLEP 190

Query: 181 GDMLYLPPQYAHDGVAIGECMTYSVGFRSPAYQELGESFLEFMMDTIDLSGRYEDPDLKA 240
           GDMLYLPP YAHDGVA+GECMTYS+GFR+P YQELGESFLEFMMDTIDL GRY DPDLK 
Sbjct: 191 GDMLYLPPHYAHDGVAVGECMTYSIGFRAPTYQELGESFLEFMMDTIDLPGRYADPDLKT 250

Query: 241 TAKPAELPLDMVARIRDELNKIRFTDDDITIFLGEHLSEPKPSVFFEARTEELSFARFFQ 300
           +A+PAEL  DM+ARIRDELNKIRFTDDDITIFLG+HLSEPKPSVFFEA  +ELSFARFFQ
Sbjct: 251 SARPAELQADMIARIRDELNKIRFTDDDITIFLGQHLSEPKPSVFFEAPPQELSFARFFQ 310

Query: 301 GAKKRGLALHRKTRMLYRGSHVFINGESFQVNRGDKAILARLADSRVLEKSDLDLASEDL 360
           GAKKRGL LHRKTRMLYRGSHVFINGESFQV+R DKAILARLAD R+LEK+D DLASEDL
Sbjct: 311 GAKKRGLVLHRKTRMLYRGSHVFINGESFQVSRQDKAILARLADQRMLEKNDFDLASEDL 370

Query: 361 LEALHQWHESGWLDII 376
           LEALHQWHESGW++ +
Sbjct: 371 LEALHQWHESGWIEFV 386


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.140    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,208,595
Number of extensions: 52137
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 291
Effective length of database: 1,207,925
Effective search space: 351506175
Effective search space used: 351506175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)