BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0292.p
         (269 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312577|ref|YP_003776669.1| heat shock protein [Herbaspiril...   483   e-138
gi|300311285|ref|YP_003775377.1| heat shock HtpX protein [Herbas...   370   e-104

>gi|300312577|ref|YP_003776669.1| heat shock protein [Herbaspirillum
           seropedicae SmR1]
          Length = 291

 Score =  483 bits (1244), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 240/250 (96%), Positives = 248/250 (99%)

Query: 1   MKRILLFIATNIAVLVVMSVILSLLGVDRFLTRSGLNLPMLMVFSLVVGFTGSIISLLMS 60
           MKRILLFIATNIAVLVVMSVILSLLGVDRFLTRSGLNLPML+VFSLVVGFTGSIISLLMS
Sbjct: 1   MKRILLFIATNIAVLVVMSVILSLLGVDRFLTRSGLNLPMLLVFSLVVGFTGSIISLLMS 60

Query: 61  KSMAKWSTGARVIETPMNGTEAWLLQTVGKLAQRAGIGMPEVAVYDGEPNAFATGAFRDS 120
           K+MAKWSTGARVI+TPMNGTEAWLLQTVGKLAQRAGIGMPEVAVYDGEPNAFATGAFRDS
Sbjct: 61  KTMAKWSTGARVIQTPMNGTEAWLLQTVGKLAQRAGIGMPEVAVYDGEPNAFATGAFRDS 120

Query: 121 ALVAVSTGLLQGMTQDEVEAVLGHEVAHIANGDMVTMTLIQGVVNTFVVFLSRVVGYFVD 180
           ALVAVSTGLLQGMTQDEVEAVLGHEVAHIANGDMVTMTLIQGVVNTFVVFLSRVVG+FVD
Sbjct: 121 ALVAVSTGLLQGMTQDEVEAVLGHEVAHIANGDMVTMTLIQGVVNTFVVFLSRVVGFFVD 180

Query: 181 SALRRNNESSGPGIGYMVTVMVCQIVFGIGASIIVAWFSRHREFRADAGAARLLGTPQPM 240
           SALRRN++ SGPGIGY VTV+VCQIVFGIGAS+IVAWFSRHREFRADAGAARLLGTPQPM
Sbjct: 181 SALRRNSDDSGPGIGYTVTVLVCQIVFGIGASLIVAWFSRHREFRADAGAARLLGTPQPM 240

Query: 241 INALARLGGF 250
           INALARLGGF
Sbjct: 241 INALARLGGF 250


>gi|300311285|ref|YP_003775377.1| heat shock HtpX protein
           [Herbaspirillum seropedicae SmR1]
          Length = 292

 Score =  370 bits (951), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/250 (73%), Positives = 215/250 (86%), Gaps = 1/250 (0%)

Query: 1   MKRILLFIATNIAVLVVMSVILSLLGVDRFLTRSGLNLPMLMVFSLVVGFTGSIISLLMS 60
           MKR++LF+ TN+AV++V+SV  SLLGV+R+LT +GLN  ML+VF  ++GF GS ISL MS
Sbjct: 1   MKRVILFLVTNLAVMLVLSVTASLLGVNRYLTANGLNFGMLLVFCGLMGFGGSFISLFMS 60

Query: 61  KSMAKWSTGARVIETPMNGTEAWLLQTVGKLAQRAGIGMPEVAVYDGEPNAFATGAFRDS 120
           K++AKWSTGARVIE P N TE WLLQTV  LA RA + MPEVAVYDG PNAFATGA + +
Sbjct: 61  KTIAKWSTGARVIEQPQNSTELWLLQTVQNLAARAQLPMPEVAVYDGPPNAFATGASKSN 120

Query: 121 ALVAVSTGLLQGMTQDEVEAVLGHEVAHIANGDMVTMTLIQGVVNTFVVFLSRVVGYFVD 180
           +LVAVSTGLLQGMT+DEVEAVL HEVAHIANGDMVT+TLIQGVVNTFV+F +R+VGYFVD
Sbjct: 121 SLVAVSTGLLQGMTKDEVEAVLAHEVAHIANGDMVTLTLIQGVVNTFVMFFARIVGYFVD 180

Query: 181 SALRRNN-ESSGPGIGYMVTVMVCQIVFGIGASIIVAWFSRHREFRADAGAARLLGTPQP 239
           S LRRNN E+SGPGIGYMVTV VC+I+FGI ASIIV +FSR RE+RADAGAA L+G+  P
Sbjct: 181 SFLRRNNEENSGPGIGYMVTVFVCEIIFGILASIIVMYFSRQREYRADAGAASLMGSNAP 240

Query: 240 MINALARLGG 249
           MINAL RLGG
Sbjct: 241 MINALRRLGG 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.326    0.139    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 780,310
Number of extensions: 32324
Number of successful extensions: 163
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 2
Length of query: 269
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,222,130
Effective search space: 226094050
Effective search space used: 226094050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)