BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0285.p
         (338 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312582|ref|YP_003776674.1| O-acetylhomoserine sulfhydrylas...   528   e-151
gi|300312963|ref|YP_003777055.1| o-acetylhomoserine sulfhydrylas...   129   3e-31
gi|300312294|ref|YP_003776386.1| cystathionine beta-lyase [Herba...    78   1e-15

>gi|300312582|ref|YP_003776674.1| O-acetylhomoserine sulfhydrylase
           [Herbaspirillum seropedicae SmR1]
          Length = 413

 Score =  528 bits (1361), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 251/257 (97%), Positives = 255/257 (99%)

Query: 1   MNDKKTYGFTTTILHSDRQKGIEHGSLHKPIHTSVTFGYEDARQLAEVFQGKQPGYRYGR 60
           MNDKKTYGFTTTILHSDRQKGIEHGSLHKPIHTSVTFGYEDARQLAEVFQGKQPGYRYGR
Sbjct: 1   MNDKKTYGFTTTILHSDRQKGIEHGSLHKPIHTSVTFGYEDARQLAEVFQGKQPGYRYGR 60

Query: 61  QGNPTVSALEDKITKMEDGKSTICFATGMAAIGAIVQGLLREGDHVVSSAFLFGNTNSLW 120
           QGNPTV+ALEDKITKMEDGKSTICFATGMAAIGAIVQGLLREGDHVVSSAFLFGNTNSLW
Sbjct: 61  QGNPTVAALEDKITKMEDGKSTICFATGMAAIGAIVQGLLREGDHVVSSAFLFGNTNSLW 120

Query: 121 MTVGAQGAKVSMVDATDVKNVEAAITPQTRLVFVETIANPRTQVADLKRIGELCRERGIL 180
           MTVGAQGAKVSMVDATDVKNVEAAIT  TRLVFVETIANPRTQVADLKRIGELCRERGIL
Sbjct: 121 MTVGAQGAKVSMVDATDVKNVEAAITANTRLVFVETIANPRTQVADLKRIGELCRERGIL 180

Query: 181 YVVDNTMTSPYLFRPKTVGAGLVVNSLTKSIGGHGNALGGALTDTGEYDWTRYPHIADSY 240
           YVVDNTMTSPYLFRPKTVGAGLVVNSLTKSIGGHGNALGGALTDTGE+DWTRYPHIA++Y
Sbjct: 181 YVVDNTMTSPYLFRPKTVGAGLVVNSLTKSIGGHGNALGGALTDTGEFDWTRYPHIAENY 240

Query: 241 KKNPAPQWGMAQIRAKA 257
           KKNPAPQWGMAQIRAKA
Sbjct: 241 KKNPAPQWGMAQIRAKA 257


>gi|300312963|ref|YP_003777055.1| o-acetylhomoserine sulfhydrylase
           [Herbaspirillum seropedicae SmR1]
          Length = 429

 Score =  129 bits (325), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 129/234 (55%), Gaps = 1/234 (0%)

Query: 1   MNDKKTYGFTTTILHSDRQKGIEHGSLHKPIHTSVTFGYEDARQLAEVFQGKQPGYRYGR 60
           M D   + F T  +H          ++  PI+ +V F ++D +  A++F  K  G  Y R
Sbjct: 1   MPDNPQWKFETISVHGGYDPDPTTRAVAVPIYQTVAFAFDDTQHGADLFDLKVQGNIYSR 60

Query: 61  QGNPTVSALEDKITKMEDGKSTICFATGMAAIGAIVQGLLREGDHVVSSAFLFGNTNSLW 120
             NPT   LE ++  +E G   +  A+G AA+   +Q +   GD++VS++ L+G T +L+
Sbjct: 61  IMNPTQDVLEKRLAALEGGIGALALASGQAAVTYAIQTIAEAGDNIVSASTLYGGTYNLF 120

Query: 121 M-TVGAQGAKVSMVDATDVKNVEAAITPQTRLVFVETIANPRTQVADLKRIGELCRERGI 179
             T+   G +    D     + E  I  +T+ +++E+I NP   + D+  + ++    G+
Sbjct: 121 AHTLPQYGVQTRFADPRQPASFEPLIDDRTKAIYIESIGNPLGNITDIAAVADIAHRHGV 180

Query: 180 LYVVDNTMTSPYLFRPKTVGAGLVVNSLTKSIGGHGNALGGALTDTGEYDWTRY 233
             +VDNT+ +PYL RP   GA +VV+SLTK +GGHG  LGGA+ D+G++ W ++
Sbjct: 181 PLIVDNTVATPYLLRPFEHGADIVVHSLTKYLGGHGTTLGGAIVDSGKFPWAKH 234


>gi|300312294|ref|YP_003776386.1| cystathionine beta-lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 392

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 5/226 (2%)

Query: 1   MNDKKTYGFT--TTILHSDRQKGIEHGSLHKPIHTSVTFGYEDARQLAEVFQGKQPGYRY 58
           M+D K    T  T+++HS  +      +    IH + T  + D   +      ++ GY Y
Sbjct: 1   MSDPKQTSLTPQTSLVHSSYRAPDGFEAFPVGIHHASTVLFPDVAAMRSRDWREKLGYTY 60

Query: 59  GRQGNPTVSALEDKITKMEDGKSTICFATGMAAIGAIVQGLLREGDHVVSSAFLFGNTNS 118
           G  G PT   LE ++ ++E GK      +G+AAI  +    L+ GD V+    ++G +  
Sbjct: 61  GLHGTPTSFVLEARLAEIEGGKYCRVTPSGLAAIAMVNFAFLKSGDDVLLPDNVYGPSKD 120

Query: 119 L--WMTVGAQGAKVSMVDATDVKNVEAAITPQTRLVFVETIANPRTQVADLKRIGELCRE 176
           L  W+    Q       D    + +   I P TRLV+ E   +   +V D+  +      
Sbjct: 121 LGQWLERDFQ-ITARFYDPMIGEGLAELIRPTTRLVWTEAPGSVSMEVPDIPALCRAAHA 179

Query: 177 RGILYVVDNTMTSPYLFRPKTVGAGLVVNSLTKSIGGHGNALGGAL 222
           +G+L  +DNT ++   F+    G  +V+ ++TK   G  + L GA+
Sbjct: 180 KGVLVAIDNTWSAGIAFKAFEHGVDIVMQAVTKYQSGGSDVLMGAV 225


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,084,870
Number of extensions: 45915
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 3
Length of query: 338
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 252
Effective length of database: 1,212,660
Effective search space: 305590320
Effective search space used: 305590320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)